View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0095-INSERTION-5 (Length: 641)
Name: NF0095-INSERTION-5
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095-INSERTION-5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 12 - 641
Target Start/End: Original strand, 24224198 - 24224828
Alignment:
| Q |
12 |
taataatagttgataacaatatgtttttgtgtaatttatacagtatgctaatatattatctccaccgaatttgtctcttctaaatgagctttcacttcat |
111 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24224198 |
taataatatttgataacaatatgtttttgtgtaatttatacagtatgctaatatattatctccaccgaatttgtctcttctaaatgagctttcacttcat |
24224297 |
T |
|
| Q |
112 |
ataatatctataaattacaccagaannnnnnnaacataattaagtataaaaaagtcatttttaccttcttttcctatcaagttgagctttcatgtttaaa |
211 |
Q |
| |
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||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
24224298 |
ataatatctataaattacaacagaatttttttaacataattaagtataaaaaagtca--tttaccttcttttcctatcaagttgatctttcatgtttaaa |
24224395 |
T |
|
| Q |
212 |
aaagtaaataatgttggaacgatttattacaaccattcaaaataaatatcatattcaattcatcaacgtgacatat---aannnnnnnnnnnnnaaactg |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| | |
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| T |
24224396 |
aaagtaaataatgttggaacgatttattacaaccattcaaaataaatatcatattcaattcatcaatgtgacatatataattttttttcttcttaaaccg |
24224495 |
T |
|
| Q |
309 |
acctaaatggaatatattaccacaaaagattctccccaatacaaagagcgcacatgaagaaatccgagcgcattaagatacataagnnnnnnnnnnnnnt |
408 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
24224496 |
accaaaatggaatatattaccacaaaagattctccccaatacaaagagcgcacatgaagaaatccgagtgcattaagatacataagaaaaacaaaaaaat |
24224595 |
T |
|
| Q |
409 |
atagaaaacttgagttagtagcttagctaatagataactcagtgttaagttattggtattctatgaaactctaactgtatttgttagtcactttgttatt |
508 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24224596 |
atagaaaacttgagtcagtagcttagctaatagataactgagtgttgagttattggtattctatgaaacgctaactgtatttgttagtcactttgttatt |
24224695 |
T |
|
| Q |
509 |
ttatcttattatctatattgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattgagttcccaaaagtttaagg |
608 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
24224696 |
ttatcttattatctatattgttaacatggtattcaaagcatgatctaatcctcattgaattgtttatcgctttcgctattgagttcccaaaagtttaagg |
24224795 |
T |
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| Q |
609 |
aatgttgtgtgattgatttggtttaatttttaa |
641 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
24224796 |
aatgttgtgtgattgatttggtttaatttttaa |
24224828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 453 - 546
Target Start/End: Original strand, 11096893 - 11096986
Alignment:
| Q |
453 |
ttaagttattggtattctatgaaactctaactgtatttgttagtcactttgttattttatcttattatctatattgttaacatggtatccaaag |
546 |
Q |
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||||| ||| |||||||||||||||||||||||| ||| |||||| |||||||||| | || |||| |||||||||||||||| |||| |||| |
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| T |
11096893 |
ttaaggtataggtattctatgaaactctaactgtcttttttagtctctttgttattctctccgattagctatattgttaacatgatatctaaag |
11096986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 527 - 637
Target Start/End: Complemental strand, 17927870 - 17927761
Alignment:
| Q |
527 |
tgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattgatt |
626 |
Q |
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|||||||||||||| || |||||| ||| ||| || || |||||||| | ||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
17927870 |
tgttaacatggtatacagagcatggtttgatcgtctttaaattgtttgtagcttccgctattgagttttcaaaagttt-gggaatgttgtgtgattgatt |
17927772 |
T |
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| Q |
627 |
tggtttaattt |
637 |
Q |
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| T |
17927771 |
tggtttaattt |
17927761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 526 - 636
Target Start/End: Original strand, 10740746 - 10740855
Alignment:
| Q |
526 |
ttgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattgat |
625 |
Q |
| |
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|||||||||||||||| | |||||| ||| |||||| |||||| | | | |||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
10740746 |
ttgttaacatggtatcaagagcatggtttgatcctccttgaatgatctgtcgcttccgcagttgagttcccaaaagtttg-ggaatgttgtgtgattgat |
10740844 |
T |
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| Q |
626 |
ttggtttaatt |
636 |
Q |
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||||||||||| |
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| T |
10740845 |
ttggtttaatt |
10740855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 640
Target Start/End: Original strand, 9401768 - 9401883
Alignment:
| Q |
524 |
tattgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattg |
623 |
Q |
| |
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|||||||||||||||||| | | | || | | |||||| ||||| | ||| | |||||| | |||||||||||||| ||| ||||| ||||||||||| |
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| T |
9401768 |
tattgttaacatggtatcgagaacttgttctgatcctccttgaactatttgtctcttccgttgttgagttcccaaaaatttg-ggaatattgtgtgattg |
9401866 |
T |
|
| Q |
624 |
atttggtttaattttta |
640 |
Q |
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| T |
9401867 |
atttggtttgattttta |
9401883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 577 - 637
Target Start/End: Original strand, 13166651 - 13166710
Alignment:
| Q |
577 |
gcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattgatttggtttaattt |
637 |
Q |
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| T |
13166651 |
gcttccgcttttgtgttcccaaaaatttg-ggaattttgtgtgattgatttggtttaattt |
13166710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 516 - 559
Target Start/End: Original strand, 3950609 - 3950652
Alignment:
| Q |
516 |
attatctatattgttaacatggtatccaaagcatgatttaatcc |
559 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| ||| |||| |
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| T |
3950609 |
attatctatattgttaacatggtatcgaaagcatggtttgatcc |
3950652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 460 - 527
Target Start/End: Complemental strand, 42631591 - 42631524
Alignment:
| Q |
460 |
attggtattctatgaaactctaactgtatttgttagtcactttgttattttatcttattatctatatt |
527 |
Q |
| |
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|||| ||||||||||||||||||| || |||||||||| |||||||||| ||||| |||||||||||| |
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| T |
42631591 |
attgatattctatgaaactctaacagtttttgttagtctctttgttattctatctgattatctatatt |
42631524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 451 - 495
Target Start/End: Complemental strand, 814396 - 814352
Alignment:
| Q |
451 |
tgttaagttattggtattctatgaaactctaactgtatttgttag |
495 |
Q |
| |
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||||||| ||||||||||||||||||||||| |||| |||||||| |
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| T |
814396 |
tgttaagctattggtattctatgaaactctagctgtctttgttag |
814352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 468 - 534
Target Start/End: Original strand, 17749814 - 17749880
Alignment:
| Q |
468 |
tctatgaaactctaactgtatttgttagtcactttgttattttatcttattatctatattgttaaca |
534 |
Q |
| |
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|||||||||| |||| || |||||||||| |||| ||||| | ||| ||||||||||||||||||| |
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| T |
17749814 |
tctatgaaaccttaaccgtttttgttagtctctttattattctctctgattatctatattgttaaca |
17749880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 600
Target Start/End: Original strand, 24725780 - 24725881
Alignment:
| Q |
499 |
ctttgttattttatcttattatctatattgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattgagttcccaa |
598 |
Q |
| |
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|||| ||||| ||||| ||||||||| ||||||||||| |||| | ||| | |||| ||| || |||||| ||||| ||||| ||||||| ||||||| |
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| T |
24725780 |
ctttattattctatctgattatctatgttgttaacatgatatcaagagcctaatttgatcgtccttgaatcatttataacttcctctattgaattcccaa |
24725879 |
T |
|
| Q |
599 |
aa |
600 |
Q |
| |
|
|| |
|
|
| T |
24725880 |
aa |
24725881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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