View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0095-INSERTION-7 (Length: 536)
Name: NF0095-INSERTION-7
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095-INSERTION-7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Original strand, 52646395 - 52646930
Alignment:
| Q |
1 |
gttttgatgtgaaaaaattatttctctttctagattgagaacgaatacggaccagagagcagggcaacaggagctgctggtcatgcatacctaaactggg |
100 |
Q |
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| T |
52646395 |
gttttgatgtgaaaaaattatttctctttctagattgagaacgaatacggaccagagagcagggcaacaggagctgctggtcatgcatacctaaactggg |
52646494 |
T |
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| Q |
101 |
ctgcaaatatggctgttggattgggaacaggagtcccttgggtgatgtgcaaggaaaatgatgccccagatcctgtggtgagctctttcattctcttggt |
200 |
Q |
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| T |
52646495 |
ctgcaaatatggctgttggattgggaacaggagtcccttgggtgatgtgcaaggaaaatgatgccccagatcctgtggtgagctctttcattctcttggt |
52646594 |
T |
|
| Q |
201 |
taactcatttgcttcagctgtcacacttaagggcgattgattgagttcaagaattgaaattatcgagtctcaagctctatatttaggctcaccatcatta |
300 |
Q |
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| T |
52646595 |
taactcatttgcttcagctgtcacacttaagggcgattgattgagttcaagaattgaaattatcgagtctcaagctctatatttaggctcaccatcatta |
52646694 |
T |
|
| Q |
301 |
tatacttattgagggttgaatatgatccatccaattctccactacagattaattcatgtaatggtttttactgtgatgatttctctccaaatacaccata |
400 |
Q |
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| T |
52646695 |
tatacttattgagggttgaatatgatccatccaattctccactacagattaattcatgtaatggtttttactgtgatgatttctctccaaataaaccata |
52646794 |
T |
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| Q |
401 |
taagcctagcatgtggactgagtcttggagtggctggtaagctatatattgttatgatgttagatataattgtttaatttcttcacccttttattcttct |
500 |
Q |
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| T |
52646795 |
taagcctagcatgtggaccgagtcttggagtggctggtaagctatatattgttctgatgttagatataattgtctaatttcttcacccttttattcttct |
52646894 |
T |
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| Q |
501 |
gatctctttctttctattctccatgatcataaggtt |
536 |
Q |
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| T |
52646895 |
gatctctttctttctattctccatgatcataaggtt |
52646930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 7345272 - 7345384
Alignment:
| Q |
70 |
ggagctgctggtcatgcatacctaaactgggctgcaaatatggctgttggattgggaacaggagtcccttgggtgatgtgcaaggaaaatgatgccccag |
169 |
Q |
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|||||| |||||||||||||| ||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||| |||||| |||||||||||| |
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| T |
7345272 |
ggagcttctggtcatgcatactcaaactgggctgcaaaaatggctgttggattaggtacaggtgtcccttgggtgatgtgtaaggaagatgatgccccag |
7345371 |
T |
|
| Q |
170 |
atcctgtggtgag |
182 |
Q |
| |
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|||| |||||||| |
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| T |
7345372 |
atccagtggtgag |
7345384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 321 - 441
Target Start/End: Original strand, 7345584 - 7345704
Alignment:
| Q |
321 |
tatgatccatccaattctccactacagattaattcatgtaatggtttttactgtgatgatttctctccaaatacaccatataagcctagcatgtggactg |
420 |
Q |
| |
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|||||||||||||||| | |||||||| ||| | || ||||||||||||||||||||||||||||| |||| |||||| ||||||| | ||||||| |
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| T |
7345584 |
tatgatccatccaattttttcctacagataaatgcttgcaatggtttttactgtgatgatttctctcccaataaaccatacaagcctaaactatggactg |
7345683 |
T |
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| Q |
421 |
agtcttggagtggctggtaag |
441 |
Q |
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| T |
7345684 |
agtcttggagtggttggtaag |
7345704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 8141341 - 8141258
Alignment:
| Q |
96 |
ctgggctgcaaatatggctgttggattgggaacaggagtcccttgggtgatgtgcaaggaaaatgatgccccagatcctgtggt |
179 |
Q |
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| T |
8141341 |
ctgggctgcgaaaatggctgttgaaatgggaactggggttccatggattatgtgcaaggaagatgatgctccagatccagtggt |
8141258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 5452480 - 5452528
Alignment:
| Q |
345 |
cagattaattcatgtaatggtttttactgtgatgatttctctccaaata |
393 |
Q |
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| T |
5452480 |
cagattaatacttgtaatggtttctattgtgattatttctctccaaata |
5452528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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