View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0095_high_1 (Length: 980)
Name: NF0095_high_1
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_high_1 |
 | |
|
| [»] scaffold0076 (2 HSPs) |
| | |
|
| [»] scaffold0063 (1 HSPs) |
| | |
|
| [»] scaffold0657 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 769; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 769; E-Value: 0
Query Start/End: Original strand, 9 - 951
Target Start/End: Original strand, 33701185 - 33702128
Alignment:
| Q |
9 |
gttttttctctttataccaagatgtatatcaaacattttcctttctattcaacaaaagaaaaaataaatttagaaactccattt----tagtagattgat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33701185 |
gttttttctctttataccaagatgtatatcaaacattttcctttctattcaacaaaagaaaaaataaatttagaaactccatttattttagtagattgat |
33701284 |
T |
|
| Q |
105 |
cttcaaaaataccaacatatgaaaatttaaaatttagtttttccaaatgtcggatactttcgagaaccaatgcaccaaaagttattacataccataacca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33701285 |
cttcaaaaataccaacatatgaaaatttaaaatttagtttttccaaatgtcggatactttcgagaaccaatgcaccaaaagttattacatactataacca |
33701384 |
T |
|
| Q |
205 |
cttttataaactaagtggagatcgcataatatacatttcatttttgggtctaaacagttgcagcataagggtgttttataagtaaatcttcttattgttg |
304 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||| |
|
|
| T |
33701385 |
cttttataaactaagtggagatagcataatatacatttcatttttgggtctaaacagttgcagcacaagggtcttttataagtaaatcttcttatcgttg |
33701484 |
T |
|
| Q |
305 |
tttaagcactattgatgtgggactgttcagaccaaaatccagagtgtacttcttcatcctcctcatgtttctagtgttttatatgtcttggtgtttagaa |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33701485 |
tttaagcactattgatgtgggactgttcagaccaaaatccagagtatacttcttcgtcctgctcatgtttctagtgttttatatgtcttggtgtttagaa |
33701584 |
T |
|
| Q |
405 |
tttctattctatagaattttgatcttgttaaattttggattaggatgggtttcgttgcatagattgtgactatagaaagagaaacgnnnnnnnnntatat |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33701585 |
tttctattctatagaattttgatcttgttaaattttggattaggatgggtttcgttgcatagattgtgactatagaaagagaaacgaaaaaaaaaaatat |
33701684 |
T |
|
| Q |
505 |
tgagaaagtctagtgttaaggaagatgaaaatgataaaaatgnnnnnnnagatgcacatgaaacaatttatataacttactacgtaatattatcatggtt |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33701685 |
tgagaaagtctagtgttaaggaagatgaaaatgataaaaatg-ttttttagatgcacatgaaacagtttatataacttactacgtaatattatcatggtt |
33701783 |
T |
|
| Q |
605 |
agtcaatcttaatacttaaactcatctgaaagatctgttaactctttattatgattcgtgaaatttaatcattggtcttgtacatatataacaatctcta |
704 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| || | |||| |||||||| ||| || |
|
|
| T |
33701784 |
agtcaatc-gaatacttaaactcacctgaaagatttgttaactctttattatgattcgtgaaatttaatcattgctc-tctacacatataacagtcttta |
33701881 |
T |
|
| Q |
705 |
tgcagtataaatatctcatttcatagtaaaacttttgactatgtgttgtaccaaataaaacttctgactatagatacttcaaaaataatgtcattttgtt |
804 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33701882 |
tgcagtataaatatctcatttcatagtaaaacttttgactatgggttgtaccaaataaaacttctgactatagatacttcaaaaataatgtcattttgtt |
33701981 |
T |
|
| Q |
805 |
caacagggtctcacgattaaatcatatttaatgtttcattaaacggactaattaaatccctcaagttaacagaacaagttacattagatagatttgctaa |
904 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33701982 |
caacggaatctcacgattaaatcatatttaatgtttcattaaacggactaattaaatccctcaagttaacagaacaagttacattagatagacttgctaa |
33702081 |
T |
|
| Q |
905 |
taacctgatattatcatagcttgaacaattggaatacatgtcacatt |
951 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33702082 |
taacctgatattatcatagcttgaacaattggaatacatgtcacatt |
33702128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 390 - 453
Target Start/End: Original strand, 33714809 - 33714872
Alignment:
| Q |
390 |
tcttggtgtttagaatttctattctatagaattttgatcttgttaaattttggattaggatggg |
453 |
Q |
| |
|
|||||||||| ||| |||||||||| ||||| ||||| |||||||||||| |||||||||||| |
|
|
| T |
33714809 |
tcttggtgttgagattttctattctttagaactttgaatttgttaaattttagattaggatggg |
33714872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 446
Target Start/End: Original strand, 21136654 - 21136735
Alignment:
| Q |
366 |
ctcatgtttctagt-gttttatatgtcttggtgtttagaatttctattctatagaattttgatcttgttaaattttggatta |
446 |
Q |
| |
|
||||||||||| || |||| |||||| |||||||| ||||||| |||||| |||| ||||| |||||||||||||||||| |
|
|
| T |
21136654 |
ctcatgtttctggttgtttgatatgtattggtgttgagaatttatattcttcagaactttgaatttgttaaattttggatta |
21136735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 243 - 350
Target Start/End: Original strand, 21311092 - 21311200
Alignment:
| Q |
243 |
catttttgggtctaaacagttgcagcataagggtgttttataagtaaatcttctt-attgttgtttaagcactattgatgtgggactgttcagaccaaaa |
341 |
Q |
| |
|
|||| |||||||||||| ||| |||| ||||| |||||||||||| ||||||| |||||| ||||| || || || |||||||||||| ||||||| |
|
|
| T |
21311092 |
cattattgggtctaaactgttagagcacaagggccttttataagtaagtcttcttctttgttggttaagtaccatcaatatgggactgttcaaaccaaaa |
21311191 |
T |
|
| Q |
342 |
tccagagtg |
350 |
Q |
| |
|
|| |||||| |
|
|
| T |
21311192 |
tctagagtg |
21311200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 769 - 855
Target Start/End: Complemental strand, 6094267 - 6094181
Alignment:
| Q |
769 |
tgactatagatacttcaaaaataatgtcattttgttcaacagggtctcacgattaaatcatatttaatgtttcattaaacggactaa |
855 |
Q |
| |
|
|||||| |||||||| ||||||| | || || |||| ||| ||||||||| ||||| | ||| |||||||| ||||||||||||||| |
|
|
| T |
6094267 |
tgactacagatactttaaaaatagtttccttatgtttaacggggtctcacaattaagttatacttaatgttccattaaacggactaa |
6094181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 812 - 858
Target Start/End: Complemental strand, 10920297 - 10920251
Alignment:
| Q |
812 |
gtctcacgattaaatcatatttaatgtttcattaaacggactaatta |
858 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||||| ||||||||| |
|
|
| T |
10920297 |
gtctcacgattaactcatacttaatgttccattaaacagactaatta |
10920251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 446
Target Start/End: Original strand, 12757 - 12812
Alignment:
| Q |
391 |
cttggtgtttagaatttctattctatagaattttgatcttgttaaattttggatta |
446 |
Q |
| |
|
|||| |||| ||||||| |||||| ||||| ||||| ||||||||||||||||||| |
|
|
| T |
12757 |
cttgatgttgagaatttgtattctttagaactttgaacttgttaaattttggatta |
12812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 12590 - 12672
Alignment:
| Q |
266 |
agcataagggtgttttataagtaaatcttcttattg-ttgtttaagcactattgatgtgggactgttcagaccaaaatccaga |
347 |
Q |
| |
|
|||| |||||| |||||||||||||||||| | ||| |||||||||||| || |||||||||| |||| | |||||||||| |
|
|
| T |
12590 |
agcacaagggtcttttataagtaaatcttcctcttgattgtttaagcaccatccatgtgggactattcaaataaaaatccaga |
12672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 769 - 855
Target Start/End: Complemental strand, 5673 - 5587
Alignment:
| Q |
769 |
tgactatagatacttcaaaaataatgtcattttgttcaacagggtctcacgattaaatcatatttaatgtttcattaaacggactaa |
855 |
Q |
| |
|
|||||| | |||||| || |||||| || || |||| ||| ||||||||| ||||| | ||| |||||||| ||||||||||||||| |
|
|
| T |
5673 |
tgactacatatactttaagaataatttccttatgtttaacggggtctcacaattaagttatacttaatgttccattaaacggactaa |
5587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 801 - 855
Target Start/End: Original strand, 21171328 - 21171382
Alignment:
| Q |
801 |
tgttcaacagggtctcacgattaaatcatatttaatgtttcattaaacggactaa |
855 |
Q |
| |
|
|||||||| ||||||||| ||||| | |||||||||||| ||| ||||||||||| |
|
|
| T |
21171328 |
tgttcaacggggtctcacaattaagttatatttaatgttccatgaaacggactaa |
21171382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0657 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0657
Description:
Target: scaffold0657; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 810 - 855
Target Start/End: Complemental strand, 1096 - 1051
Alignment:
| Q |
810 |
gggtctcacgattaaatcatatttaatgtttcattaaacggactaa |
855 |
Q |
| |
|
||||||||| ||||| | ||| |||||||||||||||||||||||| |
|
|
| T |
1096 |
gggtctcacaattaagttatacttaatgtttcattaaacggactaa |
1051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 47250 - 47213
Alignment:
| Q |
429 |
ttgttaaattttggattaggatgggtttcgttgcatag |
466 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
47250 |
ttgttaaattttggattaagatgggtttcgttacatag |
47213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 778 - 855
Target Start/End: Original strand, 17285804 - 17285881
Alignment:
| Q |
778 |
atacttcaaaaataatgtcattttgttcaacagggtctcacgattaaatcatatttaatgtttcattaaacggactaa |
855 |
Q |
| |
|
|||||| || ||||||||||||| ||| | ||||| |||||||||| ||| | |||||||| |||||||| |||||| |
|
|
| T |
17285804 |
atactttaagaataatgtcatttagtttactagggtttcacgattaagtcacacttaatgttccattaaacagactaa |
17285881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 810 - 855
Target Start/End: Complemental strand, 26963743 - 26963698
Alignment:
| Q |
810 |
gggtctcacgattaaatcatatttaatgtttcattaaacggactaa |
855 |
Q |
| |
|
||||||||| ||||| | |||||||||||| ||||||||||||||| |
|
|
| T |
26963743 |
gggtctcacaattaagttatatttaatgttccattaaacggactaa |
26963698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 716 - 745
Target Start/End: Original strand, 19692575 - 19692604
Alignment:
| Q |
716 |
tatctcatttcatagtaaaacttttgacta |
745 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
19692575 |
tatctcatttcatagtaaaacttttgacta |
19692604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 10953 times since January 2019
Visitors: 8059