View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0095_high_27 (Length: 370)
Name: NF0095_high_27
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_high_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 38 - 342
Target Start/End: Complemental strand, 23233566 - 23233261
Alignment:
| Q |
38 |
tgagatgaaagatttcctttaagattaacaaaagnnnnnnnttgaacgagcttaccattagaaaaggatacaacaagaaatagggaaactaaaatgatca |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23233566 |
tgagatgaaagatttcctttaagattaacaaaagaaaaaaattgaacgaacttaccattagaaaaggatacaacaagaaatagggaaactaaaatgatca |
23233467 |
T |
|
| Q |
138 |
tagtatnnnnnnncttgaacatttcagccatttttt-atctttgtgtgtaaaaaatatgaactcctttattactgtatatagtaaaatacctcatgatat |
236 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23233466 |
tagtataaaaaaacttgaacatttcagccatttttttatctttgtgtgtaaaaaatatgaactcctttattactttatatagtaaaatacctcatgatat |
23233367 |
T |
|
| Q |
237 |
gtttatgtcaattaaataattattaataataatgttgttgcaagaattccttcattaaaattagaacaatttctaaatgtttcgaaagtacattgatata |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23233366 |
gtttatgtcaattaaataattattaataataatgttgttgcaagaattcctttattaaaattagaacaatttctaaatgtttcgaaagtacattgatata |
23233267 |
T |
|
| Q |
337 |
ttatgt |
342 |
Q |
| |
|
|||||| |
|
|
| T |
23233266 |
ttatgt |
23233261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 85 - 342
Target Start/End: Complemental strand, 23238917 - 23238660
Alignment:
| Q |
85 |
gagcttaccattagaaaaggatacaacaagaaatagggaaactaaaatgatcatagtatnnnnnnncttgaacatttcagccattttttatctttgtgtg |
184 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||| | ||||||| | |
|
|
| T |
23238917 |
gagcttacccttggaaaaggttacaacaagaaatagggaaacaaaaatgatcataatataaaaaatcttgaacatttcagccatttttcacctttgtgcg |
23238818 |
T |
|
| Q |
185 |
taaaaaatatgaactcctttattactgtatatagtaaaatacctcatgatatgtttatgtcaattaaataattattaataataatgttgttgcaagaatt |
284 |
Q |
| |
|
||| |||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| ||| ||||||||||| |
|
|
| T |
23238817 |
taacaaatataaactcatttatcacattatatagtaaaatacctcatgatatgtttatgtcaattaaataagttttaatcataaggttattgcaagaatt |
23238718 |
T |
|
| Q |
285 |
ccttcattaaaattagaacaatttctaaatgtttcgaaagtacattgatatattatgt |
342 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||| ||| |||||| |||| |
|
|
| T |
23238717 |
ccttcattaaaattagaacaattgctaaatgtatcgaaagtgcatcaatatatcatgt |
23238660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 109 - 331
Target Start/End: Original strand, 23123081 - 23123297
Alignment:
| Q |
109 |
aacaagaaatagggaaactaaaatgatcatagtatnnnnnnncttgaacatttcagccattttttatctttgtgtgtaaaaaatatgaactcctttatta |
208 |
Q |
| |
|
||||| |||||||||||| | ||||| ||||||| |||||| |||||||||||| || | |||||||| || || ||| || | |||||| | |
|
|
| T |
23123081 |
aacaaaaaatagggaaacaagaatgactatagtataaaagaacttgaaaatttcagccattattcacctttgtgt--aacaagtataaatttctttatca |
23123178 |
T |
|
| Q |
209 |
ctgtatatagtaaaatacctcatgatatgtttatgtcaattaaataattattaataataatgttgttgcaagaattccttcattaaaattagaacaattt |
308 |
Q |
| |
|
|| || ||||||||| || | ||||||||||| ||||||||||||||| ||| |||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
23123179 |
ctttaaatagtaaaaaac-tagtgatatgtttacgtcaattaaataatttttattaataatgtt---gcaagaattctttcattaaaattagaacaattg |
23123274 |
T |
|
| Q |
309 |
ctaaatgtttcgaaagtacattg |
331 |
Q |
| |
|
|||||| ||| |||||||||||| |
|
|
| T |
23123275 |
ctaaatattttgaaagtacattg |
23123297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 342
Target Start/End: Original strand, 23123698 - 23123838
Alignment:
| Q |
202 |
tttattactgtatatagtaaaatacctcatgatatgtttatgtcaattaaataattattaataataatgttgttgcaagaattccttcattaaaattaga |
301 |
Q |
| |
|
||||| ||| |||| ||| ||| | ||||||||||| | | ||||||||||||||| |||||||| |||||||| ||| |||||||||| | ||||||| |
|
|
| T |
23123698 |
tttatcactttatagagtgaaaaatctcatgatatgctcacgtcaattaaataatttttaataattatgttgttccaataattccttcactgtaattaga |
23123797 |
T |
|
| Q |
302 |
acaatttctaaatgtttcgaaagtacattgatatattatgt |
342 |
Q |
| |
|
| |||| || ||| || ||||||||||||| |||| |||| |
|
|
| T |
23123798 |
aaaattgttagatgatttgaaagtacattgaaatatcatgt |
23123838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 333
Target Start/End: Complemental strand, 23653938 - 23653821
Alignment:
| Q |
213 |
atatagtaaaatacctcatgatatgtttatgtcaattaaataattattaataataatgttgttgcaagaattccttcattaaaattagaacaatttctaa |
312 |
Q |
| |
|
|||||||||| || || || ||||||||| |||||||||||||| ||||| || |||||||||||||| | || |||||||||||| ||||| ||| |
|
|
| T |
23653938 |
atatagtaaattatatcttgttatgtttatatcaattaaataatttttaattattatgttgttgcaagatatact---ttaaaattagaataatttttaa |
23653842 |
T |
|
| Q |
313 |
atgtttcgaaagtacattgat |
333 |
Q |
| |
|
|||| || |||| |||||||| |
|
|
| T |
23653841 |
atgtctctaaagaacattgat |
23653821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 333
Target Start/End: Complemental strand, 23659713 - 23659596
Alignment:
| Q |
213 |
atatagtaaaatacctcatgatatgtttatgtcaattaaataattattaataataatgttgttgcaagaattccttcattaaaattagaacaatttctaa |
312 |
Q |
| |
|
||||||||||| |||| || |||||||| ||||||||||| || | |||| ||||||||||||||| ||||| |||| |||||| ||||| ||| |
|
|
| T |
23659713 |
atatagtaaaaatcctcttgttatgtttacatcaattaaatagtttattttaattatgttgttgcaagaaatcctt---taaagttagaataatttttaa |
23659617 |
T |
|
| Q |
313 |
atgtttcgaaagtacattgat |
333 |
Q |
| |
|
|||| | ||||||||||||| |
|
|
| T |
23659616 |
atgtccctaaagtacattgat |
23659596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 24301883 - 24301781
Alignment:
| Q |
206 |
ttactgtatatagtaaaatacctcatgatatgtttatgtcaattaaataattattaataata--atgttgttgcaagaattccttcattaaaattagaac |
303 |
Q |
| |
|
||||| |||||||| ||| | |||||| | ||||||||||||||||| ||| ||||||||| |||||| | |||||| || ||||||||||||||| |
|
|
| T |
24301883 |
ttactttatatagtgaaaaatctcatgcaaggtttatgtcaattaaat-atttttaataatagtatgttgctacaagaaatcaatcattaaaattagaat |
24301785 |
T |
|
| Q |
304 |
aatt |
307 |
Q |
| |
|
|||| |
|
|
| T |
24301784 |
aatt |
24301781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 212 - 305
Target Start/End: Complemental strand, 8443285 - 8443193
Alignment:
| Q |
212 |
tatatagtaaaatacctcatgatatgtttatgtcaattaaataattattaataataatgttgttgcaagaattccttcattaaaattagaacaa |
305 |
Q |
| |
|
||||||||||||| | ||||||||| || |||||||||||||||| | ||||||||||||||||||| ||| ||| | |||||||||||||| |
|
|
| T |
8443285 |
tatatagtaaaat-catcatgatatagttttgtcaattaaataattttcaataataatgttgttgcaattatttctttaataaaattagaacaa |
8443193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 8443764 - 8443708
Alignment:
| Q |
277 |
caagaattccttcattaaaattagaacaatttctaaatgtttcgaaagtacattgat |
333 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| | ||| ||||| |||||||| |
|
|
| T |
8443764 |
caagaattccttcattaaaattaaaacaattgctaagtattttgaaagcacattgat |
8443708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 299
Target Start/End: Complemental strand, 13825056 - 13824969
Alignment:
| Q |
212 |
tatatagtaaaatacctcatgatatgtttatgtcaattaaataattattaataataatgttgttgcaagaattccttcattaaaatta |
299 |
Q |
| |
|
|||||||||||| | ||||| ||||||| |||||| ||||| ||| ||||||| |||| ||||||||| | |||||||||||||| |
|
|
| T |
13825056 |
tatatagtaaaaaagatcatgcaatgtttacgtcaataaaatatttaataataattttgttattgcaagaaattcttcattaaaatta |
13824969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 332
Target Start/End: Complemental strand, 20503538 - 20503416
Alignment:
| Q |
212 |
tatatagtaaaatacctcatgatatgtttatgtcaattaaataattatt--aataataatgttgttgcaagaattccttcattaaaattagaacaatttc |
309 |
Q |
| |
|
||||||||| || ||| |||| ||| ||||||||||||||| ||| || |||||| |||| ||| ||| || ||||||||||||||||||| |||| |
|
|
| T |
20503538 |
tatatagtagaaaaccacatgctatttttatgtcaattaaaatatttttttaataattatgtagtttcaataaatccttcattaaaattagaaaaattat |
20503439 |
T |
|
| Q |
310 |
taaatgtttcgaaagtacattga |
332 |
Q |
| |
|
|||||| || |||||| ||||| |
|
|
| T |
20503438 |
taaatggctctaaagtatattga |
20503416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 8659 times since January 2019
Visitors: 7803