View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0095_high_4 (Length: 552)
Name: NF0095_high_4
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 31 - 460
Target Start/End: Complemental strand, 44970078 - 44969649
Alignment:
| Q |
31 |
atgttttcaacgttcaatttaaggtgtcctatttataannnnnnnnccttctcatttattgatataattattggtgttggctttgttttgcagtttttct |
130 |
Q |
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| T |
44970078 |
atgttttcaacgttcaatttaaggtgtcctatttataattttttt-ccttctcatttattgatataattattggtgttggctttgttttgcagtttttct |
44969980 |
T |
|
| Q |
131 |
tgttcaagttcaacaaggaaggcagaatataatgagttttgactgtttcatcgcgtgctctatagtcccataacatggtatcaaagttttaactaattct |
230 |
Q |
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| T |
44969979 |
tgttcaagttcaacaaggaaggcagaatataatgagttttgactgtttcatcgcgtgctcta--gtcccataacatggtatcaaagttttaattaattct |
44969882 |
T |
|
| Q |
231 |
cttatggttaataat---ttgcggtgaatggatggaagacgacacatctcacatggtggtgaccttgagtaagtcaggctataccttttgaaaagaaaag |
327 |
Q |
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| T |
44969881 |
cttatggttaataataatttgcggtgaatggatggaagtcgacacatctcacatggtggtgaccttgagtaagtcaggctataccttttgaaaagaaaag |
44969782 |
T |
|
| Q |
328 |
atgaaggatatgtttcatgtagtgtagttggataataagaccgacgatgagtggaccctactatacaaacatgtgtgcatatacatttgttagttagtgg |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44969781 |
atgaaggatatgtttcatgtagtgtagttggataataagaccgacgatgagtggaccctactatacaaacatgtgtgcatatacatttgttagttagtgg |
44969682 |
T |
|
| Q |
428 |
gttgatgataatcttttgaaccattttaatggg |
460 |
Q |
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| T |
44969681 |
gttgatgataatcttttgaaccattttaatggg |
44969649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 461 - 523
Target Start/End: Complemental strand, 44969501 - 44969439
Alignment:
| Q |
461 |
ttgatgatgaaattttaaggttattgcctcttcttaatccttgcatggcttgtgggaaacttt |
523 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44969501 |
ttgatgatgaaattttaaggttattgcctcttcttaatccttgcatggcttgtgggaaacttt |
44969439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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