View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0095_high_45 (Length: 265)
Name: NF0095_high_45
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_high_45 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 44088098 - 44087905
Alignment:
| Q |
1 |
tcatctcactttctttgaatgattcaatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaattaccagccaaaaaattacc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44088098 |
tcatctcactttctttgaatgattcaatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattacc |
44087999 |
T |
|
| Q |
101 |
aacagaaaatttaactgcatcagaaggattagtaataacatgaaaaccaggccatttaactcttccatcagtattagcaccaccaccaacattc |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44087998 |
aacagaaaatttaactgcatcagaaggattagtaataacatgaaaaccaggccatttaactcttccatcagtattagcaccaccaccaacattc |
44087905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 44067011 - 44067204
Alignment:
| Q |
1 |
tcatctcactttctttgaatgattcaatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaattaccagccaaaaaattacc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44067011 |
tcatctcactttctttgaatgattcaatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattacc |
44067110 |
T |
|
| Q |
101 |
aacagaaaatttaactgcatcagaaggattagtaataacatgaaaaccaggccatttaactcttccatcagtattagcaccaccaccaacattc |
194 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44067111 |
aacagaaaatttaactgcatctgaaggattagtaataacatgaaaaccaggccatttaactcttccatcagtattagcaccaccaccaacattc |
44067204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 26 - 194
Target Start/End: Original strand, 44092537 - 44092705
Alignment:
| Q |
26 |
aatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaattaccagccaaaaaattaccaacagaaaatttaactgcatcagaa |
125 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44092537 |
aatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaaatttaactgcatcagaa |
44092636 |
T |
|
| Q |
126 |
ggattagtaataacatgaaaaccaggccatttaactcttccatcagtattagcaccaccaccaacattc |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44092637 |
ggattagtaataacatgaaaaccaggccatttaactcttccatcagtattagcaccaccaccaacattc |
44092705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0618 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 26 - 194
Target Start/End: Complemental strand, 7374 - 7206
Alignment:
| Q |
26 |
aatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaattaccagccaaaaaattaccaacagaaaatttaactgcatcagaa |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7374 |
aatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaaatttaactgcatcagaa |
7275 |
T |
|
| Q |
126 |
ggattagtaataacatgaaaaccaggccatttaactcttccatcagtattagcaccaccaccaacattc |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7274 |
ggattagtaataacatgaaaaccaggccatttaactcttccatcagtattagcaccaccaccaacattc |
7206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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