View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0095_low_13 (Length: 489)
Name: NF0095_low_13
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 30 - 485
Target Start/End: Original strand, 780462 - 780905
Alignment:
| Q |
30 |
ggaatttgcagacatggagcataccaatgaaagtggaaagtggaaggcgcgcggaaggagatgttgggggaaagaagagaagataaagaaaatttagtgt |
129 |
Q |
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| T |
780462 |
ggaatttgcagacatggagcataccaatgaaagtggaaagtggaaggcg----gaaggagatgttgggggaaagaagagaagataaagaaaatttagtgt |
780557 |
T |
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| Q |
130 |
ggataatgtccacaacatttcgatctttaattaatctaataataagaaaaagttagttatgcaccatacaacacttgatttagttgtgcacatgtagcca |
229 |
Q |
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| T |
780558 |
ggatgatgtccacaacatttcgatctttaat----ctaataataagaaaaagtta----tgcaccatacaacatttgatttagttgtgcacatgtagcca |
780649 |
T |
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| Q |
230 |
cttgacaaatttggaggatcaatgttgcagtcgcatggaattagattttagcaacaaatgatcactatagcaagttctctcgatgaaacattgtagagag |
329 |
Q |
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| T |
780650 |
cttgacaattatggaggatcaatgttgcagtcgcatggaattagattttagcgacaaatgatca-tatagcaagttctctcgatgaaacattgtatagag |
780748 |
T |
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| Q |
330 |
aatcc-taaaaacaaagaagaaaaatgaccattaaatttcaataataggccatatcaatggctttatccctcaagtttcttgctgaatttgatgtttttc |
428 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
780749 |
aaaccctaaaaacaaagaagaaaaatgaccattaaatttcaataataggccatatcaatggctttatccctcaagtttcttgctgaatttgatgtttttc |
780848 |
T |
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| Q |
429 |
atctgatgtttaaatttttcctcttcaacgtgtacttgagaatatttcttctcactc |
485 |
Q |
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| T |
780849 |
atctgatgtttaaatttttcctcttcaacgtgtacttgagaatatttcttctcactc |
780905 |
T |
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