View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0095_low_18 (Length: 472)
Name: NF0095_low_18
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 443
Target Start/End: Original strand, 38937390 - 38937822
Alignment:
| Q |
11 |
cagagaaatggtttcctgaaaggtctaactctgtcatttcctttaagtttccaaactcttcaggaatgggaccggagaaaagatttttgtagagaaaaag |
110 |
Q |
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||||||| ||||||||||||||||||||| |||||||| |||| |||||||| | ||| ||||| || ||||| || || | ||| ||||| |||| | |
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| T |
38937390 |
cagagaagtggtttcctgaaaggtctaaccctgtcattaccttcaagtttcctatctcatcagggattggaccagacaacatattattgtacagaagtaa |
38937489 |
T |
|
| Q |
111 |
aattttaannnnnnncaacaagccaatttgtggaggaatcattcctgttaacctannnnnnnggagttgcaaagaagttaactcagtccaattagagatc |
210 |
Q |
| |
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||| ||| || |||||||| |||||||| | | |||| ||||| ||| |||||||||| |||||||||| ||||||||||| | | |
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| T |
38937490 |
gattataatttttttcagtaagccaatctgtggaggtagctttccagttaaactattgttttggagttgcaaggaagttaacttggtccaattagatacc |
38937589 |
T |
|
| Q |
211 |
aatgaagctgaaatttgaccagaaaaagaattatccgataatcctagttctgatagtttagtcaaatttgctaatgacaaaggcaaagaacctgtcaggt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38937590 |
aatgaagctgaaatttgaccagaaaaagaattatccgataatcctagttctgatagtttagtcaaatttgctaatgacaaaggcaaagaacctgtcaggt |
38937689 |
T |
|
| Q |
311 |
tatttactgctaagctcaagaaagttagatttgtgcataggccaagctcagaaggaactttagagttcaaaaagttagcactgagatcaagatgcaccaa |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38937690 |
tatttactgctaagctcaagaaagttagatttgtgcataggccaagctcagaaggaactttagagttcaaaaagttagcactgagatcaagatgcactaa |
38937789 |
T |
|
| Q |
411 |
ctcctttagttgacctatggaagaaggaatttc |
443 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
38937790 |
ctcctttagttgacctatggaagaaggaatttc |
38937822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 396
Target Start/End: Complemental strand, 39305562 - 39305177
Alignment:
| Q |
11 |
cagagaaatggtttcctgaaaggtctaactctgtcatttcctttaagtttccaaactcttcaggaatgggaccggagaaaagatttttgtagagaaaaag |
110 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||| |||| |||||||| | ||| ||||| || ||||| || || | ||| ||||| |||| | |
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| T |
39305562 |
cagagaagtggtttcctgaaaggtctaaccctgtcattaccttcaagtttcctatctcatcagggattggaccagacaacatattattgtacagaagtaa |
39305463 |
T |
|
| Q |
111 |
aattttaannnnnnncaacaagccaatttgtggaggaatcattcctgttaacctannnnnnnggagttgcaaagaagttaactcagtccaattagagatc |
210 |
Q |
| |
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||| ||| || |||||||| |||||||| | | |||| ||||| ||| |||||||||| |||||||||| ||||||||||| | | |
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| T |
39305462 |
gattataatttttttcagtaagccaatctgtggaggtagctttccagttaaactattgttttggagttgcaaggaagttaacttggtccaattagatacc |
39305363 |
T |
|
| Q |
211 |
aatgaagctgaaatttgaccagaaaaagaattatccgataatcctagttctgatagtttagtcaaatttgctaatgacaaaggcaaagaacctgtcaggt |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39305362 |
aatgaagctgaaatttgaccagaaaaagaattatccgataatcctagttctgatagtttagtcaaatttgctaatgacaaaggcaaagaacctgtcaggt |
39305263 |
T |
|
| Q |
311 |
tatttactgctaagctcaagaaagttagatttgtgcataggccaagctcagaaggaactttagagttcaaaaagttagcactgaga |
396 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39305262 |
tatttactgctaagctcaagaaagttagatttgtgcataggccaagctcagaaggaactttagagttcaaaaagttagcactgaga |
39305177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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