View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0095_low_19 (Length: 472)
Name: NF0095_low_19
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 29 - 446
Target Start/End: Complemental strand, 55245731 - 55245311
Alignment:
| Q |
29 |
aaaacataccctagtaattgtgaggagctggctaattcaagcttgaagaagaggttcctcaagagagctaaagaagagaggtccaggctctacatactaa |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55245731 |
aaaacataccctagtaattgtgaggagctggctaattcaagcttgaagaagaggttcctcaagagagctaaagaagagaggtccaggctctacatactaa |
55245632 |
T |
|
| Q |
129 |
agaggtgcattattatgttactatgttggcacaagtacgaacaatattaattcatttactacacaaaccccactattattttttaaggtaacattaattc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||| |
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| T |
55245631 |
agaggtgcattattatgttactatgttggcacaagtacgaacaatattaattcatttactacacaatccacactattattttt-aaggtaacattaattc |
55245533 |
T |
|
| Q |
229 |
tagtagctagtttttattattttagtgact----actatataattgtggtattggtgttgtgttatatagtagatatttgttagaaaaaacaacatatga |
324 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55245532 |
tagtagctagtttttattgttttagtgactgactactatataattgtggtattggtgttgtgttatatagtagatatttgttagaaaaaacaacatatga |
55245433 |
T |
|
| Q |
325 |
atacacaaaatttgttaacgtggtttggccaattttgcttaagggcaaagcgcatgcagttccttcgtattgaatgaccaagttgagcactttattgcac |
424 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
55245432 |
atacacaaaatttgttaacgtggtttggccaattttgcttaagggcaaagcgcatgcagttccttcgtattgaatgaccaagttgagcacttcattgcac |
55245333 |
T |
|
| Q |
425 |
ctgtgaaccttagcttatctga |
446 |
Q |
| |
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|||||||||||||||| ||||| |
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| T |
55245332 |
ctgtgaaccttagcttgtctga |
55245311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 64 - 168
Target Start/End: Complemental strand, 8270071 - 8269967
Alignment:
| Q |
64 |
ttcaagcttgaagaagaggttcctcaagagagctaaagaagagaggtccaggctctacatactaaagaggtgcattattatgttactatgttggcacaag |
163 |
Q |
| |
|
|||||||||||||||||||||||| || | || || ||| ||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||| ||| |
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| T |
8270071 |
ttcaagcttgaagaagaggttccttaacaaggcaaaggaacagaggtctaggctctatatattaaagaggtgcattattatattactatgttggcaaaag |
8269972 |
T |
|
| Q |
164 |
tacga |
168 |
Q |
| |
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||||| |
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|
| T |
8269971 |
tacga |
8269967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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