View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0095_low_31 (Length: 377)
Name: NF0095_low_31
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 2922888 - 2923235
Alignment:
| Q |
1 |
ttcatctgagaatccactttggaaagtgctgttttgagttcttcgatattcagtttaattgattctttttcaacatctcccttggcttccttcaataaat |
100 |
Q |
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| T |
2922888 |
ttcatctgagaatccactttggaaagtgctgttttgagttcttcgatattcagtttaattgattctttttcaacatctcccttggcttccttcaataaat |
2922987 |
T |
|
| Q |
101 |
cagcaatgttgtgcatctgtttatttttcagatacagctcaacctgaggatatcgtacacagatgtcatccatgacctcttgaaattctttgaccgtaag |
200 |
Q |
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| T |
2922988 |
cagcaatgttgtgcatctgtttatttttcagatacagctcaacctgaggatatcgtacacagatgtcatccatgacctcttgaaattctttgaccgtaag |
2923087 |
T |
|
| Q |
201 |
tgttcctgaattgcctttgtcggccttcttaaagatcgaagcaatatcttcctgaaatgccaaagtcaatccaataacagtaaaaaagagtacatttgaa |
300 |
Q |
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| T |
2923088 |
tgttcctgaattgcctttgtcggccttcttaaagatcgaagcaatatcttcctgaaatgccaaagtcaatccaataacagtaaaaaagagtacatttgaa |
2923187 |
T |
|
| Q |
301 |
ttgaaatactggacagataatatctcataggttaattggtaatcaaac |
348 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2923188 |
ttgaaatactggacagataatatctcataggttaattggtactcaaac |
2923235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 261
Target Start/End: Complemental strand, 36128165 - 36127917
Alignment:
| Q |
13 |
tccactttggaaagtgctgttttgagttcttcgatattcagtttaattgattctttttcaacatctcccttggcttccttcaataaatcagcaatgttgt |
112 |
Q |
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||||| ||||||| || || ||||||||||||||||| |||| ||| |||||||||| |||||||||||||| ||||||||| | |||||||||| | |
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| T |
36128165 |
tccacattggaaaaagcggtcttgagttcttcgatattgagttcaatagattcttttttaacatctcccttggattccttcaacagatcagcaatgccat |
36128066 |
T |
|
| Q |
113 |
gcatctgtttatttttcagatacagctcaacctgaggatatcgtacacagatgtcatccatgacctcttgaaattctttgaccgtaagtgttcctgaatt |
212 |
Q |
| |
|
||||||||||||| || ||||| ||||| |||||||| || | | |||||||||||| ||| ||||| ||||||||||||| |||||||||||||| || |
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| T |
36128065 |
gcatctgtttattctttagatatagctccacctgagggtacctttcacagatgtcattcattacctcctgaaattctttgagtgtaagtgttcctgagtt |
36127966 |
T |
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| Q |
213 |
gcctttgtcggccttcttaaagatcgaagcaatatcttcctgaaatgcc |
261 |
Q |
| |
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| || || | ||||||||| |||| ||||||||||||| ||||||| |
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| T |
36127965 |
gtctgcatcagtcttcttaaatatcgccgcaatatcttcctaaaatgcc |
36127917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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