View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0095_low_33 (Length: 371)
Name: NF0095_low_33
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_low_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 342
Target Start/End: Complemental strand, 15783884 - 15783552
Alignment:
| Q |
13 |
gagagcgtggggaaaacataatggcatccaacatttgacgaaactgaatcaagtccttttcatttttcacgccatcatcgttgatgtggagaacggggag |
112 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15783884 |
gagagcgtggggaaaacataacggcatccaacatttgacggaactgaatcaagtccttttcatttttcacgccatcatcgttgatgtggagaacggggag |
15783785 |
T |
|
| Q |
113 |
tgagtggcacaattgaacccatctctttgaaagaagggttgtcctgaaagcatctttgatcggtagaaaagagattatatgagttagtatatcgtcgtgg |
212 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15783784 |
tgagcggcacaatagaacccatctctttgaaagaagggttgtcctgaaagcatctttgatcggtagaaaagagattatatgagttagtatatcgtcgtgg |
15783685 |
T |
|
| Q |
213 |
aaatcgttgatggtgttggtagtattcttcctcttactgttattttcgttttccatgaatggcttctgtgtagaacaatgtatatctcttggttaaagtt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15783684 |
aaatcgttgatggtgttggtagtattcttcctcttactattattttcgttttccatgaatggcttctgtgtagaacaatgtatatctcttggttcaagtt |
15783585 |
T |
|
| Q |
313 |
aatt--aacacaaaattttggcct-gttttaac |
342 |
Q |
| |
|
|||| ||| |||||||||| ||| |||||||| |
|
|
| T |
15783584 |
aattcgaacccaaaattttgccctagttttaac |
15783552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 19970455 - 19970664
Alignment:
| Q |
14 |
agagcgtggggaaaacataatggcatccaacatttgacgaaactgaatcaagtccttttcatttttcacgccatcatcgttgatgtggagaacggggagt |
113 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||||||||| | ||||||||| |||||| |||| |||||| | | || || || |||||||| |||||| |
|
|
| T |
19970455 |
agagcgtggggagaacataacggcattcaacatttgatggaactgaatctgttcctttacattgttcacgtctttattgtcgaagtggagaatcgggagt |
19970554 |
T |
|
| Q |
114 |
gagtggcacaattgaacccatctctttgaaagaagggttgtcctgaaagcatctttgatcggtagaaaagagattatatgagttagtatatcgtcgtgga |
213 |
Q |
| |
|
|||| ||||||| ||||| |||| ||||| | ||| || |||||||| ||| |||| || |||||||||| || ||||||||||||||||| ||| |
|
|
| T |
19970555 |
gagtagcacaatgagacccacgtcttggaaagcacggtggttctgaaagcgtctctgattggaagaaaagagagaatgtgagttagtatatcgtctggga |
19970654 |
T |
|
| Q |
214 |
aatcgttgat |
223 |
Q |
| |
|
| |||||||| |
|
|
| T |
19970655 |
agtcgttgat |
19970664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 208
Target Start/End: Original strand, 1348708 - 1348879
Alignment:
| Q |
37 |
catccaacatttgacgaaactgaatcaagtccttttcatttttcacgccatcatcgttgatgtggagaacggggagtgagtggcacaattgaacccatct |
136 |
Q |
| |
|
||||||||||||||||||| |||||| | |||||| | |||||||| | | |||| ||||||| ||| || |||| |||| | ||| | | |||||| |
|
|
| T |
1348708 |
catccaacatttgacgaaagtgaatccaatcctttccgtttttcacttctttgtcgtcgatgtggggaatcggaagtgtgtggaataatgggaaccatct |
1348807 |
T |
|
| Q |
137 |
ctttgaaagaagggttgtcctgaaagcatctttgatcggtagaaaagagattatatgagttagtatatcgtc |
208 |
Q |
| |
|
||| ||||||| ||| || |||||||| ||||||| | ||||||||||| || ||||||||||| ||||| |
|
|
| T |
1348808 |
cttagaaagaatggtagttctgaaagcgtctttgaatgtgagaaaagagataatgtgagttagtatctcgtc |
1348879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 20110938 - 20110844
Alignment:
| Q |
129 |
acccatctctttgaaagaagggttgtcctgaaagcatctttgatcggtagaaaagagattatatgagttagtatatcgtcgtggaaatcgttgat |
223 |
Q |
| |
|
|||||| ||||||| |||| ||| || ||||||| ||||||| || |||||||||| || ||||||||||||||||| |||| |||||||| |
|
|
| T |
20110938 |
acccatttctttgagagaacggtggttttgaaagcgtctttgaatggaagaaaagagacgatgtgagttagtatatcgtctgggaagtcgttgat |
20110844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 7864 times since January 2019
Visitors: 7737