View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0095_low_41 (Length: 346)
Name: NF0095_low_41
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 10 - 317
Target Start/End: Complemental strand, 1320800 - 1320493
Alignment:
| Q |
10 |
aagaatatcatatcacaaaatgagttgatatcactatgggagctcaaaagtggtcaaaaatttcataaagtttttattccagaggaagatattgtcaagc |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1320800 |
aagaatatcatatcacaaaatgagttgatatcactatgggagctcaaaagtggtcaaaaatttcataaagtttttgttccagaggaagatattgtcaagc |
1320701 |
T |
|
| Q |
110 |
tatcacaaagtaagactttaatttgtttttactaatgatgtgtaaatataatacatatacaagcttacattgataatatatgtttatgatgcagctttac |
209 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1320700 |
tatcacaaagtaatactttaatttgtttttactaatgttgtgtaaatataatacatatacaagcttacattggtaatatatgtttatgatgcagctttac |
1320601 |
T |
|
| Q |
210 |
cccctccagaagatattccaatttccatcattcatagcatatttgttagaggtgacatggcaaactttgagctagaggaagatgatcttgaaggttcaca |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1320600 |
cccctccagaagatattccaatttccatcattcatagcatatttgttagaggtgacatggcaaactttgagctagaggaagatgatcttgaagcttcaca |
1320501 |
T |
|
| Q |
310 |
actatacc |
317 |
Q |
| |
|
|||||||| |
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| T |
1320500 |
actatacc |
1320493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 1336563 - 1336444
Alignment:
| Q |
9 |
gaagaatatcatatcacaaaatgagttgatatcactatgggagctcaaaagtggtcaaaaatttcataaagtttttattccagaggaagatattgtcaag |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||||| ||| ||||||| ||||||||| ||||| |
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| T |
1336563 |
gaagaatatcatatcacaaaatgagttgatatcactatgggaactcaaaagtggtcaaaactttaacaaagtatttgttccagaagaagatattatcaag |
1336464 |
T |
|
| Q |
109 |
ctatcacaaagtaagacttt |
128 |
Q |
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|||||||||||||||||||| |
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| T |
1336463 |
ctatcacaaagtaagacttt |
1336444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 192 - 315
Target Start/End: Complemental strand, 1336127 - 1336007
Alignment:
| Q |
192 |
tttatgatgcagctttaccccctccagaagatattccaatttccatcattcatagcatatttgttagaggtgacatggcaaactttgagctagaggaaga |
291 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||| ||||||||||||||||| | |
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| T |
1336127 |
tttatgatgcagctttaccccctccagaagatattccaatttccatcgttcatagcatatttgttaaaggcgacatg---tactttgagctagaggaaaa |
1336031 |
T |
|
| Q |
292 |
tgatcttgaaggttcacaactata |
315 |
Q |
| |
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||| ||||||| |||||||||||| |
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| T |
1336030 |
tgaccttgaagcttcacaactata |
1336007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 1264101 - 1264218
Alignment:
| Q |
9 |
gaagaatatcatatcacaaaatgagttgatatcactatgggagctcaaaagtggtcaaaaatttcataaagtttttattccagaggaagatattgtcaag |
108 |
Q |
| |
|
||||||| | ||| ||||||||||||||||||||||||||||||| |||| |||||||| || | ||||||||| |||||| ||||||||||||||| |
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|
| T |
1264101 |
gaagaattttataacacaaaatgagttgatatcactatgggagcttaaaaatggtcaaatccttaacaaagtttttgctccagaagaagatattgtcaag |
1264200 |
T |
|
| Q |
109 |
ctatcacaaagtaagact |
126 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
1264201 |
ctatcacaaagtaagact |
1264218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 198 - 315
Target Start/End: Original strand, 1264310 - 1264427
Alignment:
| Q |
198 |
atgcagctttaccccctccagaagatattccaatttccatcattcatagcatatttgttagaggtgacatggcaaactttgagctagaggaagatgatct |
297 |
Q |
| |
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|||||| ||||||||||||| | |||| ||| ||||||| ||||||| |||||||| ||| ||| | | ||||||||||||||||||||||| || |
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| T |
1264310 |
atgcagttttaccccctccacacaatataccagtttccattcttcatagtgtatttgttcaaggggaccttgtgaactttgagctagaggaagatgacct |
1264409 |
T |
|
| Q |
298 |
tgaaggttcacaactata |
315 |
Q |
| |
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||||| |||||||||||| |
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|
| T |
1264410 |
tgaagcttcacaactata |
1264427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 1253519 - 1253575
Alignment:
| Q |
10 |
aagaatatcatatcacaaaatgagttgatatcactatgggagctcaaaagtggtcaa |
66 |
Q |
| |
|
|||||| | ||| |||||||||||||||||| |||||||||||| |||| ||||||| |
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|
| T |
1253519 |
aagaattttataacacaaaatgagttgatataactatgggagcttaaaaatggtcaa |
1253575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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