View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0095_low_44 (Length: 324)
Name: NF0095_low_44
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_low_44 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 141 - 324
Target Start/End: Complemental strand, 44285890 - 44285708
Alignment:
| Q |
141 |
agaagctttagcactcaatctgtctctgttgctgcttcccggtaacattgatcaagaaatttacgggcggaaccttcctttaagtctatcgagtgcctga |
240 |
Q |
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| T |
44285890 |
agaagctttagtactcaatccatctctgttgctgcttcccggtaacattgatcaatcaatttacgg-cggaatcttcctttaagtcaatcgagtgcctga |
44285792 |
T |
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| Q |
241 |
cttctctattgatctgaccggctcgattgagacagagagtaaaggtgcgaatcggctaaaaggctgagtccgagactgggagaa |
324 |
Q |
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| T |
44285791 |
cttctctattgatctgaccgaattgattgagacagagagtaaaggtgcgaatcggctaaaaggtcgagtccgagattgggagaa |
44285708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 144 - 324
Target Start/End: Original strand, 44070126 - 44070305
Alignment:
| Q |
144 |
agctttagcactcaatctgtctctgttgctgcttcccggtaacattgatcaagaaatttacgggcggaaccttcctttaagtctatcgagtgcctgactt |
243 |
Q |
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| T |
44070126 |
agctttagtactcaatctgtctctgttgctgcttcctggcaacatcaatcaatcaattaacgg-cggaaccttcctttaagtcaatcaagtgcctgactt |
44070224 |
T |
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| Q |
244 |
ctctattgatctgaccggctcgattgagacagagagtaaaggtgcgaatcggctaaaaggctgagtccgagactgggagaa |
324 |
Q |
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| T |
44070225 |
ctctattgatctgaccggctagattgagacagagagtaaaggtgcaaaccggctaaacggctgagtccgagattgggagaa |
44070305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 16443749 - 16443843
Alignment:
| Q |
144 |
agctttagcactcaatctgtctctgttgctgcttcccggtaacattgatcaagaaatttacgggcggaaccttcctttaagtctatcgagtgcctg |
239 |
Q |
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|||||||| ||||||||||||||||||||||||||| || ||||| ||||| |||| || ||||||||||||||||||||| ||| |||||||| |
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| T |
16443749 |
agctttagtactcaatctgtctctgttgctgcttcctggcaacatcaatcaatcaattaac-ggcggaaccttcctttaagtcaatcaagtgcctg |
16443843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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