View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0095_low_68 (Length: 262)
Name: NF0095_low_68
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_low_68 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 49619345 - 49619113
Alignment:
| Q |
1 |
tttgattggtttatcttttttcacttaccaccatgtaaggtcattgatcccctggttaattattgggggtttcataaatatttcacgcaaaacacctatt |
100 |
Q |
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| T |
49619345 |
tttgattggtttatcttttttcacttaccaccatgtaaggtcattgatcccctggttaattattgggggtttcataaatctttcacgcaaaacacctatt |
49619246 |
T |
|
| Q |
101 |
tatataatattagaatttcaatctaatacaataaacatgataatgaaaccattggaacaaacaacgtaaattggtgataataatgtcaataatcatgaac |
200 |
Q |
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| T |
49619245 |
tatataatattagaatttcaatctaatacaacaaacatgataatgaaaccattggaacaaacaacgtaaattggtgataataatgtcaataatcatgaac |
49619146 |
T |
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| Q |
201 |
tcaacaatgattgaacttactactagtacttac |
233 |
Q |
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| T |
49619145 |
tcaacaatgattgaacttactactagtacttac |
49619113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 49614189 - 49614144
Alignment:
| Q |
177 |
ataataatgtcaataatcatgaactcaacaatgattgaacttacta |
222 |
Q |
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| T |
49614189 |
ataataatcacaataattatgaattcaacaatgattgaacttacta |
49614144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 208
Target Start/End: Complemental strand, 2930144 - 2930024
Alignment:
| Q |
91 |
aacacctatttatataatattagaatttcaatctaatacaataaacatgataatgaaaccattggaacaaacaacgtaaattggtgataataa---tgtc |
187 |
Q |
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| T |
2930144 |
aacacctatttatatgaaattacaattttgatctaatacaacacacaaaataatgaaaccattgaaacaaacaacgtacattggtgataataagaataac |
2930045 |
T |
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| Q |
188 |
aataatcatgaactcaacaat |
208 |
Q |
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| T |
2930044 |
aataattatgaactcaacaat |
2930024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 2965317 - 2965243
Alignment:
| Q |
139 |
gataatgaaaccattggaacaaacaacgtaaattggtgataa---taatgtcaataatcatgaactcaacaatga |
210 |
Q |
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| T |
2965317 |
gataatgaaaccattgaaacaaacaacgtacattggtgataatactaatagcaataattatgaactcaacaatga |
2965243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 210
Target Start/End: Complemental strand, 2974830 - 2974718
Alignment:
| Q |
95 |
cctatttatataatattagaatttcaatctaatacaata-aacatgataatgaaaccattggaacaaacaacgtaaattggtgataataatgtcaataat |
193 |
Q |
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| T |
2974830 |
cctatttatatgaaattataatttcaatctaatgcaacacaaaaagataatgaaac-attgaaacaaacaacgtacattg---ataataatgaaaataat |
2974735 |
T |
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| Q |
194 |
catgaactcaacaatga |
210 |
Q |
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| T |
2974734 |
tatgaactcaacaatga |
2974718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 210
Target Start/End: Complemental strand, 2952785 - 2952667
Alignment:
| Q |
91 |
aacacctatttatataatattagaatttcaatctaatacaata--aacatgataatgaaaccattggaacaaacaacgtaaattggtgataataatgtca |
188 |
Q |
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| T |
2952785 |
aacacccatttatatgaaattacaatttcaatctaatgcaacacaaagagattaatgaaaccattgaaacaaacaacgtacattgataataataat---a |
2952689 |
T |
|
| Q |
189 |
ataatcatgaactcaacaatga |
210 |
Q |
| |
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||||| |||||||||||||||| |
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| T |
2952688 |
ataattatgaactcaacaatga |
2952667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 2935436 - 2935353
Alignment:
| Q |
91 |
aacacctatttatataatattagaatttcaatctaatacaata-aacatgataatgaaaccattggaacaaacaacgtaaattg |
173 |
Q |
| |
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|||||| |||||||| | |||| |||||||||||||| ||| | || | |||||||||||||||| ||||||||||||| |||| |
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| T |
2935436 |
aacacccatttatatgaaattacaatttcaatctaatgcaacacaaaaagataatgaaaccattgaaacaaacaacgtacattg |
2935353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 2983650 - 2983577
Alignment:
| Q |
140 |
ataatgaaaccattggaacaaacaacgtaaattggtgataat---aatgtcaataatcatgaactcaacaatga |
210 |
Q |
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| T |
2983650 |
ataatgaaaccattgaaacaaacaacgtacatgggtgataatgagaataacaataattatgaactcaacaatga |
2983577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 2996667 - 2996740
Alignment:
| Q |
140 |
ataatgaaaccattggaacaaacaacgtaaattggtgataa---taatgtcaataatcatgaactcaacaatga |
210 |
Q |
| |
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||||||||||||||| |||||||||| || ||||||||||| |||| ||||||| |||||||||||||||| |
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| T |
2996667 |
ataatgaaaccattgaaacaaacaacttacattggtgataatactaatagcaataattatgaactcaacaatga |
2996740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 210
Target Start/End: Original strand, 3003010 - 3003131
Alignment:
| Q |
91 |
aacacctatttatataatattagaatttcaatctaatacaata-aacatgataatgaaac-cattggaacaaacaacgtaaattggtgataataatgtca |
188 |
Q |
| |
|
||||||||||||||| | |||| ||||||||||| || ||| | || | ||||||||||| |||| ||||||| ||||| |||| |||||||||| | |
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| T |
3003010 |
aacacctatttatatgaaattacaatttcaatctgatgcaacacaaaaagataatgaaacatattgaaacaaactacgtacattgatgataataataata |
3003109 |
T |
|
| Q |
189 |
ataatcatgaactcaacaatga |
210 |
Q |
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|
||||| ||||||| |||||||| |
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| T |
3003110 |
ataattatgaacttaacaatga |
3003131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 43599 - 43689
Alignment:
| Q |
97 |
tatttatataatattagaatttcaatctaat---acaataaacatgataatgaaaccattggaacaaacaacgtaaattggtgataataat |
184 |
Q |
| |
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||||||||| | |||| |||||||||||||| |||| | ||| ||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
43599 |
tatttatatgaaattacaatttcaatctaattacacaacacacaaaataatgaaaccattgaaacaaacaacgtacattggtgataataat |
43689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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