View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0095_low_9 (Length: 506)
Name: NF0095_low_9
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 30 - 294
Target Start/End: Complemental strand, 42954760 - 42954495
Alignment:
| Q |
30 |
gatttggtacgataaattatcattttatctgtgaacatgaaatgcaacaaagttctaaatgatttggtac-aataaaatagttagtataattgaatcttt |
128 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42954760 |
gatttggtacgataaactatcattttatctgtgaacatgaaatgcaacaaagttctaaatgatttggtaccaataaaatagttagtataattgaatcttt |
42954661 |
T |
|
| Q |
129 |
acatactaaaccgaacaataatcatatcacattgacttgatcttagtctttaattaatctgtgaataatgagattgagaaattaagtgtgaggagcatta |
228 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42954660 |
acctactaaaccgaacaataatcatatcacattgacttgatcttagtctttaattaatctgtgaataatgagattgagaaattaagtgtgaggagcatta |
42954561 |
T |
|
| Q |
229 |
tgtacgcgcttaacatgagagtaaagtgctggatacagctaaaaactagtagttagaatgttgcaa |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42954560 |
tgtacgcgcttaacatgagagtaaagtgctggatacagctaaaaactagtagttagaatgttgcaa |
42954495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 395 - 497
Target Start/End: Complemental strand, 42954392 - 42954290
Alignment:
| Q |
395 |
ttggtgattaattcctttcatatattctactaccactggtactttcttcttaatccaccttttagttaacctcaaaaccagaaacacactccctctattt |
494 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42954392 |
ttggtgattaattcctttcctatattctactaccactagtactttcttcttaatccaccttttagttaacctcaaaaccaaaaacacactccctctattt |
42954293 |
T |
|
| Q |
495 |
cat |
497 |
Q |
| |
|
||| |
|
|
| T |
42954292 |
cat |
42954290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 7686 times since January 2019
Visitors: 7737