View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0110-INSERTION-2 (Length: 848)
Name: NF0110-INSERTION-2
Description: NF0110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0110-INSERTION-2 |
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Alignment Details
Target: chr3 (Bit Score: 554; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 241 - 838
Target Start/End: Original strand, 49997970 - 49998566
Alignment:
| Q |
241 |
taatatattccgtgatgattgaattaatagcttcacaatgacacgtagtttatatacaaccaaaaaacttatcacggaggtatgcattggcccacaatga |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49997970 |
taatatattccgtgatgattgaattaatagcttcacaatgacacgtagtttatatacaaccaaaaaacttatcacggaggtatgcattggcccacaatga |
49998069 |
T |
|
| Q |
341 |
cctattctcataggttctagaaacccattcattccccgcaatttcgtgctgcacaaccatctttatccaaaaatcttcaaattctttcgagctgaaattt |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49998070 |
cctattctcataggttctagaaacccattcattccccgcaatttcgtgctgcacaaccatctttatccaaaaatcttcaaattctttcgggctgaaattt |
49998169 |
T |
|
| Q |
441 |
gagtaagttgcctttttaaaatcctccaaaaatgaagaactctcaacatttttacatgcattcttgtgcaagttccaaacacatagttgatgacatgaat |
540 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49998170 |
gagtaagttgcctttttgaaatcctccaaaaatgaagaactctcgacatttttacatgcattcttgtgcaagttccaaacacatagttgatgacatgaat |
49998269 |
T |
|
| Q |
541 |
ccggaaaaacatgttttatagcctccatcatgacctcatccccatttgtcacaacaacttcgggatgtttatttcgcattgcttctgaaaaagattttaa |
640 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
49998270 |
ccggaaaaacatgttttatagcctccatcatgacctcatccccatttgtcacaacaactttgggatgtttatttcgcattgcttctgaaaaagattttaa |
49998369 |
T |
|
| Q |
641 |
gacccacttatagttctcaattgtttcatccgacatcaaagcacagccaaatataattggttgagaatgatgattgcacccggataaaattaccaatgga |
740 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
49998370 |
gacccacttataggtctcaattgtttcatccgacatcaaagcacaaccaaatataattggttgagaatgatgattgcacccggagaaaattaccaatgga |
49998469 |
T |
|
| Q |
741 |
caattgtatttgttcttctcgtgcgtcgtgtcaagtacaagaacatcgttgaaacatagataatcagatatgctacatccatctgcccaacaaagttg |
838 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49998470 |
caattgtatttgttcttctcgtgcgtggtgt-aagtacaagaacatcgttgaaacatagataatcagatatgctacatccatctgcccaaaaaagttg |
49998566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 49997413 - 49997654
Alignment:
| Q |
8 |
taccattcgcttaataacatttaatgcaccagccaatgcaatctgctctttaacttccttaaaaatctctgttgtgtaaatttttgcagcatcattctca |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49997413 |
taccattcgcttaataacatttaatgcaccagccaatgcaatctgctctttaacttccttaaaaatctctgttgtgtaaatttttgcagaatcattctca |
49997512 |
T |
|
| Q |
108 |
aactcttgaagagacgtggtcaacacaggttctgaatataaagacttgttatcagccatcagctcattgtttctatattttctcaaagtctgctcaaaac |
207 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49997513 |
aactcttgaagagacttggtcaacacaggttctgaatataaagacttgttatcagccatcagctcattgtttctatattttctcaaagtctgctcaaaac |
49997612 |
T |
|
| Q |
208 |
taagcataaattcaaaaacgttgtttttcttcataatatatt |
249 |
Q |
| |
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| T |
49997613 |
taagcataaattcaaaaacgctgattttcttcataatatatt |
49997654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 195; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 8 - 267
Target Start/End: Complemental strand, 24803411 - 24803154
Alignment:
| Q |
8 |
taccattcgcttaataacatttaatgcaccagccaatgcaatctgctctttaacttccttaaaaatctctgttgtgtaaatttttgcagcatcattctca |
107 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24803411 |
taccattcgcttaataacatttaatgcaccaaccaatacaatctgctctttaactt---taaaaatctctgttgtgtaaatttttgcagcatcattctca |
24803315 |
T |
|
| Q |
108 |
aactcttgaagagacgtggtcaacacaggttctgaatataaagacttgttatcagccatcagctcattgtttctatattttctcaaagtc-tgctcaaaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24803314 |
aactcttgaagagacgtggtcaacacaggttttgaatacaaagacttgttgtgagccatcagctcattgtttctatattttctcaaagtcttgctcaaaa |
24803215 |
T |
|
| Q |
207 |
ctaagcataaattcaaaaacgttgtttttcttcataatatattccgtgatgattgaattaa |
267 |
Q |
| |
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|||||||||||||| ||||| ||| |||||||||||||||| || |||||||||||||||| |
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| T |
24803214 |
ctaagcataaattccaaaacattgattttcttcataatatactcggtgatgattgaattaa |
24803154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 9e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 8 - 267
Target Start/End: Original strand, 52658359 - 52658615
Alignment:
| Q |
8 |
taccattcgcttaataacatttaatgcaccagccaatgcaatctgctctttaacttccttaaaaatctctgttgtgtaaatttttgcagcatcattctca |
107 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52658359 |
taccattcgcttaataacgtttaatgcaccagccaatacaatctgctctttaactt---taaaaatctctgttgtgtaaatttttgcagcatcattctca |
52658455 |
T |
|
| Q |
108 |
aactcttgaagagacgtggtcaacacaggttctgaatataaagacttgttatcagccatcagctcattgtttctatattttctcaaagtct-gctcaaaa |
206 |
Q |
| |
|
|||||||||||||| | ||||||||||| || | |||| ||||||||||||| |||||||| ||||||||||||||||||||||||||| | |||||||| |
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|
| T |
52658456 |
aactcttgaagagatg-ggtcaacacagattttaaatacaaagacttgttatgagccatcaactcattgtttctatattttctcaaagtttggctcaaaa |
52658554 |
T |
|
| Q |
207 |
ctaagcataaattcaaaaacgttgtttttcttcataatatattccgtgatgattgaattaa |
267 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||||||||||||||||| |||||||||||||||| |
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|
| T |
52658555 |
ctaagcataaattccaaaacattgattttcttcataatatattcggtgatgattgaattaa |
52658615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 25518166 - 25518220
Alignment:
| Q |
54 |
tctttaacttccttaaaaatctctgttgtgtaaatttttgcagcatcattctcaa |
108 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||||||||| ||||||||| |||||| |
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|
| T |
25518166 |
tctttaacttctttaaagatctctgctgtgtaaattttggcagcatcaatctcaa |
25518220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 19720335 - 19720281
Alignment:
| Q |
54 |
tctttaacttccttaaaaatctctgttgtgtaaatttttgcagcatcattctcaa |
108 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||||||| | ||||||||| |||||| |
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|
| T |
19720335 |
tctttaacttctttaaagatctctgctgtgtaaattctggcagcatcaatctcaa |
19720281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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