View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0110-INSERTION-7 (Length: 650)
Name: NF0110-INSERTION-7
Description: NF0110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0110-INSERTION-7 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 125 - 510
Target Start/End: Complemental strand, 13509460 - 13509072
Alignment:
| Q |
125 |
ttgcacaagcagtattgttatatagagatgttgaactctaccaccatgtttannnnnnnnnnnnnnnnnnnatcctttgtt-taaattgtggacgatttg |
223 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||| |||||||||||||||||| |
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| T |
13509460 |
ttgcacaagcagtattgttatatagaaatgttgaactctaccaccatgtttattttttcttttctttctttatcatttgttataaattgtggacgatttg |
13509361 |
T |
|
| Q |
224 |
tttgnnnnnnnn--cttccaaaccaaccctgcaaaattgtcactatagagtactttattctcgcattcaatcaatttaacttttactttactacccccac |
321 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||| ||||||| |
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| T |
13509360 |
tttgaaaaaaaaaacttcaaaaccaaccctgcaaaattgtcactatagagtacttcattctcacattcaatcaatttaacttttaatttacaacccccat |
13509261 |
T |
|
| Q |
322 |
ggcagtttctgcaacaacattgcataaaaaattattattaccccgcctgggttgaggcaaaatggacggttttttgggttgattcgtttggatctatcta |
421 |
Q |
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| T |
13509260 |
gacagtttctgctacaacattgcataaaaaattattattaccccgcctgggttgtggcaaaatggacggttttttgggttgattcgtttggatctatcta |
13509161 |
T |
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| Q |
422 |
cgaaagagtttccgagtaagcttaatcaaataatcaattccacattttgatgttgtttgttgctatgtattttagtatacaaccatgaa |
510 |
Q |
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| T |
13509160 |
cgaaagagtttccgagtaagcttaatcaaataatcaattccacattttgatgttgtctgttgctatgtattttagtatacaaccatgaa |
13509072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 125 - 510
Target Start/End: Complemental strand, 13598990 - 13598602
Alignment:
| Q |
125 |
ttgcacaagcagtattgttatatagagatgttgaactctaccaccatgtttannnnnnnnnnnnnnnnnnnatcctttgtt-taaattgtggacgatttg |
223 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||| |||||||||||||||||| |
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| T |
13598990 |
ttgcacaagcagtattgttatatagaaatgttgaactctaccaccatgtttattttttcttttctttctttatcatttgttataaattgtggacgatttg |
13598891 |
T |
|
| Q |
224 |
tttgnnnnnnnn--cttccaaaccaaccctgcaaaattgtcactatagagtactttattctcgcattcaatcaatttaacttttactttactacccccac |
321 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||| ||||||| |
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| T |
13598890 |
tttgaaaaaaaaaacttcaaaaccaaccctgcaaaattgtcactatagagtacttcattctcacattcaatcaatttaacttttaatttacaacccccat |
13598791 |
T |
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| Q |
322 |
ggcagtttctgcaacaacattgcataaaaaattattattaccccgcctgggttgaggcaaaatggacggttttttgggttgattcgtttggatctatcta |
421 |
Q |
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| T |
13598790 |
gacagtttctgctacaacattgcataaaaaattattattaccccgcctgggttgtggcaaaatggacggttttttgggttgattcgtttggatctatcta |
13598691 |
T |
|
| Q |
422 |
cgaaagagtttccgagtaagcttaatcaaataatcaattccacattttgatgttgtttgttgctatgtattttagtatacaaccatgaa |
510 |
Q |
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| T |
13598690 |
cgaaagagtttccgagtaagcttaatcaaataatcaattccacattttgatgttgtctgttgctatgtattttagtatacaaccatgaa |
13598602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 573 - 650
Target Start/End: Complemental strand, 13506051 - 13505974
Alignment:
| Q |
573 |
ctattgacatttgttcacaagagcgattatatgaaacggggagaaagtaccttgcatattgaaaagaaagcatcgtcc |
650 |
Q |
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| T |
13506051 |
ctattgacatttgttcacaagagcgattatatgaaacggggagaaagtaccttgcatattgaaaagaaagcatcgtcc |
13505974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 13510871 - 13510757
Alignment:
| Q |
8 |
gtatatatgtcttgctctttcttcaattttttcacacttattgcggtaatcacnnnnnnncctgctcatttcttcatccttttcttcttcttaattgtgt |
107 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| |
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| T |
13510871 |
gtatatatgtcttgctctt----caattttttcacacttattgcggtaatcacttttttttc--ct-atttcttcatccttttcttcttcttaattgtgt |
13510779 |
T |
|
| Q |
108 |
gttatgcagtggaggagttgca |
129 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
13510778 |
gttatgcagtggaggagttgca |
13510757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 13600402 - 13600288
Alignment:
| Q |
8 |
gtatatatgtcttgctctttcttcaattttttcacacttattgcggtaatcacnnnnnnncctgctcatttcttcatccttttcttcttcttaattgtgt |
107 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| |
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| T |
13600402 |
gtatatatgtcttgctctt----caattttttcacacttattgcggtaatcacttttttttc--ct-atttcttcatccttttcttcttcttaattgtgt |
13600310 |
T |
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| Q |
108 |
gttatgcagtggaggagttgca |
129 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
13600309 |
gttatgcagtggaggagttgca |
13600288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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