View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0225-INSERTION-10 (Length: 620)

Name: NF0225-INSERTION-10
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0225-INSERTION-10
NF0225-INSERTION-10
[»] chr7 (2 HSPs)
chr7 (8-612)||(38176556-38177160)
chr7 (451-607)||(42414464-42414620)
[»] chr2 (5 HSPs)
chr2 (8-581)||(28626670-28627246)
chr2 (8-135)||(4319035-4319162)
chr2 (460-612)||(34211965-34212117)
chr2 (409-612)||(18977902-18978100)
chr2 (409-500)||(35582057-35582148)
[»] chr3 (3 HSPs)
chr3 (8-387)||(1526686-1527065)
chr3 (439-545)||(8689706-8689812)
chr3 (439-545)||(9041575-9041681)
[»] chr8 (1 HSPs)
chr8 (460-612)||(8619084-8619236)
[»] chr5 (2 HSPs)
chr5 (460-612)||(22498411-22498562)
chr5 (457-567)||(12169084-12169194)
[»] chr6 (2 HSPs)
chr6 (437-575)||(31973257-31973397)
chr6 (437-505)||(31977257-31977325)
[»] chr4 (1 HSPs)
chr4 (419-500)||(49110185-49110266)
[»] chr1 (1 HSPs)
chr1 (451-495)||(49915115-49915159)


Alignment Details
Target: chr7 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 8 - 612
Target Start/End: Original strand, 38176556 - 38177160
Alignment:
Q  8 cataccaagttgtagcagcttttatgaacctgcctcgctgatctcgaatacacatacctgtcccaaaccggttctgttcactgaaaatggctgcatctac 107  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38176556 cataccaatttgtagcagcttttatgaacctgcctcgctgatctcgaacacacatacctgtcccaaaccggttctgttcactgaaaatggctgcatctac 38176655  T
Q  108 attacacttcagaaatcccgcggctggtggctaccacgcaactgtatcttgcggtgattgctgaacttgtgcagtagcagaatttcttgcggcttgccat 207  Q
     ||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||    
T  38176656 gttacatttcagaaatcccgcggctggtggctgccacgcaattgtatcttgcggtgattgctgaacttgtgtagtagcagaatttctagcagcttgccat 38176755  T
Q  208 tgaaataacaagtcgcgcgctagctggactgctatgttactcggctgtagctgaccatcccataccttatcattacgtcgtctccaaatacaccataaca 307  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  38176756 tgaaataacaactcgcgcgctagctggactgctatgttactcggctgcagctgaccatcccataccttgtcattacgacgtctccaaatacaccataaca 38176855  T
Q  308 tcatcgccaagtcgttgcattcttcaactgtcaacctgcacagtaaagagaaaatacaagctgcaaagctctcagcaacaacaacagttgcagacatgac 407  Q
    ||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||    
T  38176856 tcatcgccaagtccttgcattcttcaactatcagcctgcacagtaaagagaaaatacaagctgcaaagctctcggcaacagcaacagttgcagaaatgac 38176955  T
Q  408 gtcccataagccagctgttcgccaaactgtcttcgcctcatcgcatccaataaaaacatgccagtcattctcataatttgtttcacaaaaaggacaacaa 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38176956 gtcccataagccagctgttcgccaaactgtcttcgcctcatcgcatccaagaaaaacatgccagtcattctcataatttgtttcacaaaaaggacaacaa 38177055  T
Q  508 tctgcacatggcacacctttgtcttgcagtcgcatacgcgtaggaagaacgcctctcaacgctctccagagaaagacttttactctttgtggaatcttca 607  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38177056 tctgtacatggcacacctttgtcttgcagtcgcatacgcgtaggaagaacacctctcaacgctctccagagaaagacttttactctttgtggtatcttca 38177155  T
Q  608 aactc 612  Q
    |||||    
T  38177156 aactc 38177160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 451 - 607
Target Start/End: Complemental strand, 42414620 - 42414464
Alignment:
Q  451 catccaataaaaacatgccagtcattctcataatttgtttcacaaaaaggacaacaatctgcacatggcacacctttgtcttgcagtcgcatacgcgtag 550  Q
    |||||||| |||| || ||| ||||| |||||||||||||| |||||||| || | ||| |  || || |||||||| ||||| |||||||||||||| |    
T  42414620 catccaatgaaaatataccaatcattttcataatttgtttcgcaaaaagggcagctatccgtgcacggaacacctttatcttgaagtcgcatacgcgtgg 42414521  T
Q  551 gaagaacgcctctcaacgctctccagagaaagacttttactctttgtggaatcttca 607  Q
    | || || |||||||  || ||||| | ||| ||||| | |||||  ||||||||||    
T  42414520 ggagtactcctctcagtgccctccataaaaatactttaattctttccggaatcttca 42414464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 8 - 581
Target Start/End: Original strand, 28626670 - 28627246
Alignment:
Q  8 cataccaagttgtagcagcttttat----gaacctgcctcgctgatctcgaatacacatacctgtcccaaaccggttctgttcactgaaaatggctgcat 103  Q
    ||||||||||||||||||||||||     |||||| || || ||||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||||    
T  28626670 cataccaagttgtagcagcttttaattaagaaccttccacgatgatctcgaatacacatacctgtcccaaaccggttatgtgccctgaagatggctgcat 28626769  T
Q  104 ctacattacacttcagaaatcccgcggctggtggctaccacgcaactgtatcttgcggtgattgctgaacttgtgcagtagcagaatttcttgcggcttg 203  Q
    |||| ||| |||||| |||||  |  |||||||||| ||| | |||||||||||||||||| ||||||   |||||||||||||||||||||||||||||    
T  28626770 ctacgtta-acttcaaaaatcatgttgctggtggctgccaggtaactgtatcttgcggtgaatgctgattgtgtgcagtagcagaatttcttgcggcttg 28626868  T
Q  204 ccattgaaataacaagtcgcgcgctagctggactgctatgttactcggctgtagctgaccatcccataccttatcattacgtcgtctccaaatacaccat 303  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||| || |||| |||| || ||||||||||||||||  |||||||||||||||||    
T  28626869 ccattgaaataacaactcgcgcactagctggactgctatgttactcggttgcagctcaccaccctataccttatcattacgatgtctccaaatacaccat 28626968  T
Q  304 aacatcatcgccaagtcgttgcattcttcaactgtcaacctgcacagtaaagagaaaatacaagctgcaaagctctcagcaacaacaacagttgcagaca 403  Q
    ||||||||  ||||||  ||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | ||| |    
T  28626969 aacatcattaccaagtgcttgcactcttcaactatcaacctgcacagtaaagagaaaatacaagttgcaaagctctcagcaacatcaacagtagtagaaa 28627068  T
Q  404 tgacgtcccataagccagctgttcgccaaactgtcttcgcctcatcgcatccaataaaaacatgccagtcattctcataatttgtttcacaaaaaggaca 503  Q
    | ||||||||||||  || |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  28627069 tcacgtcccataaggtagttgttcgccaaactgtcttcgcctcgtcgcatccaataaaaacatgccagtcgttctcataatttgtttcacaaaaaggaga 28627168  T
Q  504 acaatctgcacatggcacacctttgtcttgcagtcgcatacgcgtaggaagaacgcctctcaacgctctccagagaaa 581  Q
     |||| || ||||||||||||||||||  ||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  28627169 gcaatatgtacatggcacacctttgtccggcagtcgcatacgcgtaggaagaacacctctcaacactctccagagaaa 28627246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 4319035 - 4319162
Alignment:
Q  8 cataccaagttgtagcagcttttatgaacctgcctcgctgatctcgaatacacatacctgtcccaaaccggttctgttcactgaaaatggctgcatctac 107  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4319035 cataccaagttgtagcagcttttatgaacctgcttcgctgatctcgaatacacatacctgtcccaaaccggttctgttcactgaaaatggctgcatctac 4319134  T
Q  108 attacacttcagaaatcccgcggctggt 135  Q
    ||||||||||||||||||||||||||||    
T  4319135 attacacttcagaaatcccgcggctggt 4319162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 460 - 612
Target Start/End: Complemental strand, 34212117 - 34211965
Alignment:
Q  460 aaaacatgccagtcattctcataatttgtttcacaaaaaggacaacaatctgcacatggcacacctttgtcttgcagtcgcatacgcgtaggaagaacgc 559  Q
    ||||||||||| |  ||||| ||||||||||||||||||||||| ||||| | ||| || ||| |||| |||||||  |||||||||||||| | | | |    
T  34212117 aaaacatgccaattgttctcgtaatttgtttcacaaaaaggacagcaatccgtacacggaacaactttatcttgcaaccgcatacgcgtaggcaaagcac 34212018  T
Q  560 ctctcaacgctctccagagaaagacttttactctttgtggaatcttcaaactc 612  Q
    | ||||  |||||||| || || |||||||  ||||| |||||||| ||||||    
T  34212017 ccctcacagctctccaaaggaaaacttttatcctttgaggaatctttaaactc 34211965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 409 - 612
Target Start/End: Original strand, 18977902 - 18978100
Alignment:
Q  409 tcccataagccagctgttcgccaaactgtcttcgcctcatcgcatccaataaaaacatgccagtcattctcataatttgtttcacaaaaaggacaacaat 508  Q
    ||||||| ||| ||||| |||||||| || ||| | || || || || || ||||||||||| || || || ||||||||||||||||||||||| ||||    
T  18977902 tcccataggcctgctgtccgccaaacagttttcacttcttcacaccccatgaaaacatgccaatcgttttcgtaatttgtttcacaaaaaggacagcaat 18978001  T
Q  509 ctgcacatggcacacctttgtcttgcagtcgcatacgcgtaggaagaacgcctctcaacgctctccagagaaagacttttactctttgtggaatcttcaa 608  Q
    | | |||||| |||||||| ||| |||  ||||||||| || ||| ||| || ||||  |||||||| || ||     |||| ||||| |||||||||||    
T  18978002 ccgtacatggaacacctttatctggcaaccgcatacgcataagaaaaacacccctcacagctctccaaaggaa-----ttaccctttgcggaatcttcaa 18978096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 409 - 500
Target Start/End: Original strand, 35582057 - 35582148
Alignment:
Q  409 tcccataagccagctgttcgccaaactgtcttcgcctcatcgcatccaataaaaacatgccagtcattctcataatttgtttcacaaaaagg 500  Q
    ||||| || |||| |||| |||||||  | |||||||| ||||| ||||| |||| |||  |||||||||||||||||||||| ||||||||    
T  35582057 tcccacaatccagttgttagccaaacatttttcgcctcttcgcacccaatgaaaatatgttagtcattctcataatttgtttcgcaaaaagg 35582148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 312; Significance: 1e-175; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 8 - 387
Target Start/End: Complemental strand, 1527065 - 1526686
Alignment:
Q  8 cataccaagttgtagcagcttttatgaacctgcctcgctgatctcgaatacacatacctgtcccaaaccggttctgttcactgaaaatggctgcatctac 107  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1527065 cataccaatttgtagcagcttttaagaacctgcctcgctgatctcgaacacacatacctgtcccaaaccggttctgttcactgaaaatggctgcatctac 1526966  T
Q  108 attacacttcagaaatcccgcggctggtggctaccacgcaactgtatcttgcggtgattgctgaacttgtgcagtagcagaatttcttgcggcttgccat 207  Q
     ||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||    
T  1526965 gttacatttcagaaatcccgcggctggtggctgccacgcaattgtatcttgcggtgattgctgaacttgtgtagtagcagaatttctagcagcttgccat 1526866  T
Q  208 tgaaataacaagtcgcgcgctagctggactgctatgttactcggctgtagctgaccatcccataccttatcattacgtcgtctccaaatacaccataaca 307  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  1526865 tgaaataacaactcgcgcgctagctggactgctatgttactcggctgcagctgaccatcccataccttgtcattacgacgtctccaaatacaccataaca 1526766  T
Q  308 tcatcgccaagtcgttgcattcttcaactgtcaacctgcacagtaaagagaaaatacaagctgcaaagctctcagcaaca 387  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  1526765 tcatcgccaagtccttgcattcttcaactgtcagcctgcacagtaaagagaaaatacaagctgcaaagctctcggcaaca 1526686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 439 - 545
Target Start/End: Complemental strand, 8689812 - 8689706
Alignment:
Q  439 ttcgcctcatcgcatccaataaaaacatgccagtcattctcataatttgtttcacaaaaaggacaacaatctgcacatggcacacctttgtcttgcagtc 538  Q
    |||||||| || || || |||||||||||| | |||||||||||||||||| ||||||| || |||| ||  | |||  |||||||||| ||||| ||||    
T  8689812 ttcgcctcttcacaccctataaaaacatgctaatcattctcataatttgttgcacaaaatggccaactattcgaacactgcacacctttatcttgtagtc 8689713  T
Q  539 gcatacg 545  Q
     ||||||    
T  8689712 tcatacg 8689706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 439 - 545
Target Start/End: Complemental strand, 9041681 - 9041575
Alignment:
Q  439 ttcgcctcatcgcatccaataaaaacatgccagtcattctcataatttgtttcacaaaaaggacaacaatctgcacatggcacacctttgtcttgcagtc 538  Q
    |||||||| || || || |||||||||||| | |||||||||||||||||| ||||||| || |||| ||  | |||  |||||||||| ||||| ||||    
T  9041681 ttcgcctcttcacaccctataaaaacatgctaatcattctcataatttgttgcacaaaatggccaactattcgaacactgcacacctttatcttgtagtc 9041582  T
Q  539 gcatacg 545  Q
     ||||||    
T  9041581 tcatacg 9041575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 460 - 612
Target Start/End: Original strand, 8619084 - 8619236
Alignment:
Q  460 aaaacatgccagtcattctcataatttgtttcacaaaaaggacaacaatctgcacatggcacacctttgtcttgcagtcgcatacgcgtaggaagaacgc 559  Q
    ||||||||||| || ||||| ||||||||||||||||||||||||||||| | |||||| |||||||| |||||||  |||||||||||||||| ||| |    
T  8619084 aaaacatgccaatcgttctcgtaatttgtttcacaaaaaggacaacaatccgtacatggaacacctttatcttgcatccgcatacgcgtaggaaaaacac 8619183  T
Q  560 ctctcaacgctctccagagaaagacttttactctttgtggaatcttcaaactc 612  Q
    | || |  |||||||| || || |||||||| ||||| |||||||||||||||    
T  8619184 cccttacagctctccaaaggaaaacttttaccctttgcggaatcttcaaactc 8619236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 460 - 612
Target Start/End: Original strand, 22498411 - 22498562
Alignment:
Q  460 aaaacatgccagtcattctcataatttgtttcacaaaaaggacaacaatctgcacatggcacacctttgtcttgcagtcgcatacgcgtaggaagaacgc 559  Q
    ||||||||||| || ||||| ||||||||||||||||||||||| ||||| | ||| || |||||||| |||||||  |||||||||||||| | ||| |    
T  22498411 aaaacatgccaatcgttctcgtaatttgtttcacaaaaaggacagcaatccgtacacggaacacctttatcttgcaaccgcatacgcgtaggcaaaacac 22498510  T
Q  560 ctctcaacgctctccagagaaagacttttactctttgtggaatcttcaaactc 612  Q
    | ||||  |||||||| || || |  ||||| |||||  ||||||||||||||    
T  22498511 ccctcacagctctccaaaggaa-aaatttaccctttgcagaatcttcaaactc 22498562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 457 - 567
Target Start/End: Complemental strand, 12169194 - 12169084
Alignment:
Q  457 ataaaaacatgccagtcattctcataatttgtttcacaaaaaggacaacaatctgcacatggcacacctttgtcttgcagtcgcatacgcgtaggaagaa 556  Q
    |||||||| || || |||||||||||||| ||||||||||| ||||| | ||| | |||| |||| ||||||||||| |||| |||||| || || ||||    
T  12169194 ataaaaacgtgtcaatcattctcataattagtttcacaaaatggacagctatccgtacattgcacgcctttgtcttgtagtctcatacgagttgggagaa 12169095  T
Q  557 cgcctctcaac 567  Q
    | |||||||||    
T  12169094 cacctctcaac 12169084  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 437 - 575
Target Start/End: Original strand, 31973257 - 31973397
Alignment:
Q  437 tcttcgcctcatcgcatccaataaaaacatgccagtcattctcataatttgtttcacaaaaaggacaacaatc--tgcacatggcacacctttgtcttgc 534  Q
    |||||||||| | |||||| ||||  |||||||| ||||| ||||||||||| ||||||  |||||||| |||   | ||||||||||| ||| |||||     
T  31973257 tcttcgcctccttgcatcctataacgacatgccaatcattttcataatttgtctcacaatgaggacaactatcctcgtacatggcacacatttttcttgt 31973356  T
Q  535 agtcgcatacgcgtaggaagaacgcctctcaacgctctcca 575  Q
    |||   || || ||||||||||| ||||| ||||| |||||    
T  31973357 agttttattcgtgtaggaagaacacctcttaacgccctcca 31973397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 437 - 505
Target Start/End: Original strand, 31977257 - 31977325
Alignment:
Q  437 tcttcgcctcatcgcatccaataaaaacatgccagtcattctcataatttgtttcacaaaaaggacaac 505  Q
    |||||||||| || ||||| ||||| |||||||| ||||| ||||||||||| | ||||  ||||||||    
T  31977257 tcttcgcctcctcacatcctataaagacatgccaatcattttcataatttgtcttacaatgaggacaac 31977325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 419 - 500
Target Start/End: Complemental strand, 49110266 - 49110185
Alignment:
Q  419 cagctgttcgccaaactgtcttcgcctcatcgcatccaataaaaacatgccagtcattctcataatttgtttcacaaaaagg 500  Q
    |||| |||||||||||  | |||||||| ||||| ||||| || ||||| || ||||||||||| ||||||| |||||||||    
T  49110266 cagccgttcgccaaacatttttcgcctcttcgcagccaatgaacacatgtcaatcattctcatagtttgtttgacaaaaagg 49110185  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 495
Target Start/End: Complemental strand, 49915159 - 49915115
Alignment:
Q  451 catccaataaaaacatgccagtcattctcataatttgtttcacaa 495  Q
    ||||| ||||| |||||||| ||||||||||||||||| ||||||    
T  49915159 catcctataaacacatgccaatcattctcataatttgtctcacaa 49915115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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