View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0225-INSERTION-5 (Length: 618)
Name: NF0225-INSERTION-5
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225-INSERTION-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 8 - 618
Target Start/End: Original strand, 39784096 - 39784697
Alignment:
| Q |
8 |
caatttaaaaaggatgctatgaagatgcaacatcattatagttatattctctctcattcttggcatctgatacattatattatttaatttaatttaattt |
107 |
Q |
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| T |
39784096 |
caatttaaaaaggatgct-tgaagatgcaacatcattatagttatattctctctcattcttggcatctgatacattatattatttaatttaattt----- |
39784189 |
T |
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| Q |
108 |
tgcagctcttcatgatgaatttctactttgttagactagtgcagacaaccttttctattactctaaagttttaaacggata-gagagttttatacaatgc |
206 |
Q |
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| T |
39784190 |
tgcagctcttcatgatgaatttctactttgttagac----gcagacaaccttttctattactctaaagttttaaaaggataagagagttttatacaatgc |
39784285 |
T |
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| Q |
207 |
aattttgtatagttttttagattctaggcattgacattgcatcatgccaaaccagattcatcatgcatgaaacaaaacaaaactatcacacaaatgacat |
306 |
Q |
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| T |
39784286 |
aattttgtatagttttttagattctaggcattgacattgcatcatgccaaaccatattcatcatgcatgaaacaaaacaaaactatcacacaaatgacat |
39784385 |
T |
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| Q |
307 |
gatataactgtgaaaaatttaaagcaaaacatgtaacaaaagtcaagttagaaaataagaaagcacataacataattccatagcataaggtagaagaaag |
406 |
Q |
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| T |
39784386 |
gatataactgtgaaaaatttaaagcaaaacatgaaacaaaagtcaagttagaaaataagaaagcacataacataattccatagcataaggtagaagaaag |
39784485 |
T |
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| Q |
407 |
aaatgaaatataggttctaaccttgtaagaattgaagtatatatcacaattttctgctgaacaagaaaacaacagaacaagaagatctctgaagaaaaag |
506 |
Q |
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| T |
39784486 |
aaatgaaatataggttctaaccttgtaagaattgaagtatatatcacaattttctgcagaacaagaaaacaacagaacaagaagatctctgaagaaaaag |
39784585 |
T |
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| Q |
507 |
caagaaactcttccttaatcttttcnnnnnnncttgagggacaacctttttaaaatttgatgaaaactctgctaatatgctctcacattccccatcaagc |
606 |
Q |
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| T |
39784586 |
caagaaactcttccttaatcttttcaaaaaaacttgagggacaacctttttaaaatttgatgaaaactctgctaatatgctctcacattccccatcaagc |
39784685 |
T |
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| Q |
607 |
tctggctattat |
618 |
Q |
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| T |
39784686 |
tctggctattat |
39784697 |
T |
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