View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0225-INSERTION-6 (Length: 738)
Name: NF0225-INSERTION-6
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225-INSERTION-6 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 699; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 8 - 738
Target Start/End: Original strand, 293703 - 294433
Alignment:
| Q |
8 |
gcaacacacgtccaaacatgacagattctaagtttgaagggaagttgcgctctttcatataatcggcaagagtacgatctccctgtgatatggataactc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
293703 |
gcaacacacgtccaaacatgacagattctaagtttgaagggaagttgcgctctttcatataatctgcaagagtacgatctccctgtgatatggataactc |
293802 |
T |
|
| Q |
108 |
tccaattagtgtatgttaaggaatgaacagaccagattcagatgataaattaagataacatttaaaaccacctaaatgaagtacaggtaataaaacttta |
207 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
293803 |
tccaattagtgcatgttaaggaatgaacagaccagattcagatgataaattaagataacatttaaaaccacctaaatgaagtacaagtaataaaacttta |
293902 |
T |
|
| Q |
208 |
gacatttgagtaatttatgtctgggtaatttaaggctattaatgttaaataatacgatcgaaatatgagccaaggcacctcaaatttccaaacaagccat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
293903 |
gacatttgagtaatttatgtctgggtaatttaaggctattaatgttaaataatacgatcaaaatatgagccaaggcacctcaaatttccaaacaagccat |
294002 |
T |
|
| Q |
308 |
tttccaccttttgtgaactgtgagtttgttttatcagccgcaaaacttccaaggaagtcagcacaggtttcaggtgctgctctagatagccggtaattga |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
294003 |
tttccaccttttgtgaactgtgagtttgttttatcagccacaaaacttccaaggaagtcagcacatgtttcaggtgctgctctagatagccggtaattga |
294102 |
T |
|
| Q |
408 |
accattcctcaaattcaccaaattcttcagccccttgaattccaatcttaacctgcatatccaattagtcagctgcaaatagactttctaatcttttatc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
294103 |
accattcctcaaattcaccaaattcttcagccccttgaattccaatcttaacctgcatattcaattagtcagctgcaaatagactttctaatcttttatc |
294202 |
T |
|
| Q |
508 |
tccttaatcattaaaaacagaattttataagaatgcagaatacagaacaaatcagaaatcaacaattcttcaagaagctaaagttgttgcatgttaagta |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
294203 |
tccttaatcattaaaaacagaattttataagaatgcagaatacagaacaaatcagaaatcaacaattcttcaagaagctaaagttgttgcatgttaagta |
294302 |
T |
|
| Q |
608 |
aagccgcatggatggcttaaatttaaaacaataacgctcccgatctatgaagcaccaacttaaacatagacactgtgaagggtcccacattgaaagagat |
707 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
294303 |
aagccgcatggatggtttaaatttaaaacaataacgctcccgatctatgaagcaccaacttaaacatagacactgtgaagggtcccacattgaaagagat |
294402 |
T |
|
| Q |
708 |
atcacatgaacatgagtcaataagtgataaa |
738 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
294403 |
atcacatgaacatgagtcaataagtgataaa |
294433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 6e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 282 - 465
Target Start/End: Complemental strand, 27491910 - 27491727
Alignment:
| Q |
282 |
gcacctcaaatttccaaacaagccattttccaccttttgtgaactgtgagtttgttttatcagccgcaaaacttccaaggaagtcagcacaggtttcagg |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||||||| | ||||| |||||||| |
|
|
| T |
27491910 |
gcacctcaaatttccaaacaagccattttccaccttttgtgaattgtgaattggttttatcagctacaaaacttccaaggaacttggcacatgtttcagg |
27491811 |
T |
|
| Q |
382 |
tgctgctctagatagccggtaattgaaccattcctcaaattcaccaaattcttcagccccttgaattccaatcttaacctgcat |
465 |
Q |
| |
|
|||||||| || || | ||||||||||| || ||| | ||||||||||||| ||| |||| |||||||| ||| |||||||| |
|
|
| T |
27491810 |
agctgctcttgagagtctataattgaaccactcttcataatcaccaaattctttagctccttcaattccaaccttcacctgcat |
27491727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 27492331 - 27492235
Alignment:
| Q |
21 |
aaacatgacagattctaagtttgaagggaagttgcgctctttcatataatcggcaagagtacgatctccctgtgatatggataactctccaattagt |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||| |||||||||| |||||||| || ||||||||||||||||| ||| || |||||||| |
|
|
| T |
27492331 |
aaacatgacagattctaagttcgaagggaagtttttatctgtcatataatcagcaagagtgcggtctccctgtgatatggacaaccctgcaattagt |
27492235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 9950 times since January 2019
Visitors: 7932