View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0225-INSERTION-8 (Length: 780)
Name: NF0225-INSERTION-8
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225-INSERTION-8 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 194 - 570
Target Start/End: Original strand, 41186914 - 41187298
Alignment:
| Q |
194 |
tgtaggaatcatgattgtagaggtcatatatttttatgtgtagatactatcaataagttcttagttgtgaaataaaaggagtactcagcacagtgttttt |
293 |
Q |
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| T |
41186914 |
tgtaggaatcatgattgtagaggtcatatatttttatgtgtagatactatcaataagttcttagttgtgaaataaaaggagtactcagcacagtgttttt |
41187013 |
T |
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| Q |
294 |
ataattcttgagcagtggaaatcttgaaatgctacttgagactaattactgttcaaattatgatgacttctcaaaaaacataaacgacggaaatttaggc |
393 |
Q |
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| T |
41187014 |
ataattcttgagcagtggaaatcttgaaatgctacttgagactaattactgttcaaattatgatgacttctcaaaaaacataaaagacggaaatttaggc |
41187113 |
T |
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| Q |
394 |
ctataaatcaaactctgatatcattttttgtagagacatccatcgtaatcaaagtctgttagcattacgataaagctcgattt-------attttaattt |
486 |
Q |
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| T |
41187114 |
ctataaatcaaactctgatatcattttttttagagacatccatcgtagtcaaagtctattagcattacgataaagctcgattttgatatcattttaattt |
41187213 |
T |
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| Q |
487 |
ttataggaactaaaattgttgatagaaaatattgcggaggctaaaactcgaagaacactttt-taaagatcgataagacgataac |
570 |
Q |
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| T |
41187214 |
ttataggaactaaaattgttgatagaaaatattgcggaggctaaaactcgaagaacacttttatagagatcgataagacgataac |
41187298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 41186758 - 41186883
Alignment:
| Q |
7 |
aatgtccccccttaaagaaccaaggagaccatagtggtttaggattcttgcatatatttggactatcatgtcatatttatgtttacttttggctgcgaac |
106 |
Q |
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| T |
41186758 |
aatgtccccccttaaagaaccaaggagaccatagtggtttaggattcttgcatatatttggactatcatgccatatttatgtttacttttggctgcgaac |
41186857 |
T |
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| Q |
107 |
aacttagttaatagagatccttatca |
132 |
Q |
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| T |
41186858 |
aacttagttaatagagatccttatca |
41186883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 638 - 744
Target Start/End: Original strand, 41187366 - 41187472
Alignment:
| Q |
638 |
tgaagatagtgatgcaagtctggttcgaaaacacatgactaaaaagaaggcaagcgaagatggtgatgtaagtctggttgtttatgtttcgagcatatag |
737 |
Q |
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| T |
41187366 |
tgaagatagtgatgcaagtctggttcgaaaacacatgactaaaaagaaggcaagcgaagatggtgatgtaagtctggttctttatgtttcgagcatatag |
41187465 |
T |
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| Q |
738 |
cttatca |
744 |
Q |
| |
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||||||| |
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| T |
41187466 |
cttatca |
41187472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 522
Target Start/End: Original strand, 10823307 - 10823356
Alignment:
| Q |
473 |
atttattttaatttttataggaactaaaattgttgatagaaaatattgcg |
522 |
Q |
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||||||||| ||||||||| | ||||||||| |||||||||||| ||||| |
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| T |
10823307 |
atttattttgatttttataaggactaaaattattgatagaaaattttgcg |
10823356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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