View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0225_high_15 (Length: 357)
Name: NF0225_high_15
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_high_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 38 - 344
Target Start/End: Complemental strand, 293707 - 293401
Alignment:
| Q |
38 |
gttgcaaggcgtagattcttctagacgaaatgcattgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcatt |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
293707 |
gttgcaaggcgtagattcttctagacgaaatgcattgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcatt |
293608 |
T |
|
| Q |
138 |
gttcatagagatataaagccagccaacttagtggtcaccaaacaggggcagattaaactcattgattttggtgctgcaacagaccttcggatcggaaaga |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
293607 |
gttcatagagatataaagccagccaacttagtggtcaccaaacaggggcagattaaactcattgattttggtgctgcaacagaccttcggatcggaaaga |
293508 |
T |
|
| Q |
238 |
attatgttcccgaccgcacccttttggatcctgactattgccccccagaactctatgtactcccagaagaaacaccaagtcccccaccggcgccaattgc |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
293507 |
attatgttcccgaccgcacccttttggatcctgactattgccccccagaactctatgtactcccagaagaaacaccaagtcccccaccggcgccaattgc |
293408 |
T |
|
| Q |
338 |
tgcgttc |
344 |
Q |
| |
|
||||||| |
|
|
| T |
293407 |
tgcgttc |
293401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 38 - 244
Target Start/End: Original strand, 27492340 - 27492546
Alignment:
| Q |
38 |
gttgcaaggcgtagattcttctagacgaaatgcattgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcatt |
137 |
Q |
| |
|
||||||||| |||| ||||| | | ||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||||| || || ||||| |
|
|
| T |
27492340 |
gttgcaaggtatagactcttcaaaaagaaatgcattgatcatcaagcaaataatgcgccaaatcattacatctcttaagaaaattcacgacactggcatc |
27492439 |
T |
|
| Q |
138 |
gttcatagagatataaagccagccaacttagtggtcaccaaacaggggcagattaaactcattgattttggtgctgcaacagaccttcggatcggaaaga |
237 |
Q |
| |
|
||||| || ||| ||||||| ||||||| || || || ||| | ||||||||||||||||||||||||||||| |||||||||||| | || ||||||| |
|
|
| T |
27492440 |
gttcacagggatgtaaagccttccaacttggttgttacaaaaaaagggcagattaaactcattgattttggtgcagcaacagaccttagaattggaaaga |
27492539 |
T |
|
| Q |
238 |
attatgt |
244 |
Q |
| |
|
||||||| |
|
|
| T |
27492540 |
attatgt |
27492546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 229
Target Start/End: Original strand, 27495080 - 27495236
Alignment:
| Q |
73 |
tgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagccagccaacttagtggt |
172 |
Q |
| |
|
|||||||||||||||| |||||||| ||| |||| |||||||||||||||||||| || |||| |||||| || ||||||||||| | ||||| || || |
|
|
| T |
27495080 |
tgatcatcaagcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgt |
27495179 |
T |
|
| Q |
173 |
caccaaacaggggcagattaaactcattgattttggtgctgcaacagaccttcggat |
229 |
Q |
| |
|
|| ||||| || | ||| ||| || ||||||||||||| |||||||| ||| |||| |
|
|
| T |
27495180 |
tacaaaacaaggtcggatcaaattcgttgattttggtgcagcaacagatcttaggat |
27495236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 229
Target Start/End: Original strand, 27501738 - 27501894
Alignment:
| Q |
73 |
tgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagccagccaacttagtggt |
172 |
Q |
| |
|
|||||||||||||||| |||||||| ||| |||| |||||||||||||||||||| || |||| |||||| || ||||||||||| | ||||| || || |
|
|
| T |
27501738 |
tgatcatcaagcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgt |
27501837 |
T |
|
| Q |
173 |
caccaaacaggggcagattaaactcattgattttggtgctgcaacagaccttcggat |
229 |
Q |
| |
|
|| ||||| || | ||| ||| || ||||||||||||| |||||||| ||| |||| |
|
|
| T |
27501838 |
tacaaaacaaggtcggatcaaattcgttgattttggtgcagcaacagatcttaggat |
27501894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 229
Target Start/End: Original strand, 27516530 - 27516686
Alignment:
| Q |
73 |
tgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagccagccaacttagtggt |
172 |
Q |
| |
|
|||||||||||||||| |||||||| ||| |||| |||||||||||||||||||| || |||| |||||| || ||||||||||| | ||||| || || |
|
|
| T |
27516530 |
tgatcatcaagcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgt |
27516629 |
T |
|
| Q |
173 |
caccaaacaggggcagattaaactcattgattttggtgctgcaacagaccttcggat |
229 |
Q |
| |
|
|| ||||| || | ||| ||| || ||||||||||||| |||||||| ||| |||| |
|
|
| T |
27516630 |
tacaaaacaaggtcggatcaaattcgttgattttggtgcagcaacagatcttaggat |
27516686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 229
Target Start/End: Original strand, 27507565 - 27507711
Alignment:
| Q |
83 |
gcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagccagccaacttagtggtcaccaaacag |
182 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||| || |||| |||||| || ||||||||||| | ||||| || || || |||| |
|
|
| T |
27507565 |
gcaaataatgcgccagataattacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgttacaaaacta |
27507664 |
T |
|
| Q |
183 |
gggcagattaaactcattgattttggtgctgcaacagaccttcggat |
229 |
Q |
| |
|
|| | ||||||| || ||||||||||||| |||||||| ||| |||| |
|
|
| T |
27507665 |
ggtcggattaaattcgttgattttggtgcagcaacagatcttaggat |
27507711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 9919 times since January 2019
Visitors: 7932