View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0225_high_23 (Length: 304)
Name: NF0225_high_23
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 9 - 265
Target Start/End: Complemental strand, 9015471 - 9015215
Alignment:
| Q |
9 |
agcagagagtggtggtcagcaaaagaaaaagagtagcttatatcgaacatcatccttttgagaacaaaacatgtaatatctaactaattatgaactaaac |
108 |
Q |
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| T |
9015471 |
agcagaaagtggtggtcagcaaaagaaaaagagtagcttatatcgaacatcatccttttgagaacaaaacatgtaatatctaactaattatgaactaaac |
9015372 |
T |
|
| Q |
109 |
taattaataatgttacccttggatttggatgtaagtgtattatgactgaatttggttgtgaaatattagttaagatattttcttttatagtagaagataa |
208 |
Q |
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| T |
9015371 |
taattaataatgttacccttggatttggatgtaagtgtattatgactgaatttggttgtgaaatattagttaagatattttcttttatagtagaagataa |
9015272 |
T |
|
| Q |
209 |
tggttatgttttgaggaatacacaaacaaaggacaggggaatgtatgaaagatgaat |
265 |
Q |
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| T |
9015271 |
tggttatgttttgaggaatacacaaacaaaggacaggggaatgtatgaaagatgaat |
9015215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 5040247 - 5040172
Alignment:
| Q |
21 |
tggtcagcaaaagaaaaagagtagcttatatcgaacatcatccttttgagaacaaaacatgtaatatctaactaat |
96 |
Q |
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||||| ||||||||| |||| ||||||||||||||||||| | ||||||||||||||| ||| ||||| |||||| |
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| T |
5040247 |
tggtcggcaaaagaagaagaatagcttatatcgaacatcaacaatttgagaacaaaacaagtagtatcttactaat |
5040172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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