View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0225_high_24 (Length: 300)
Name: NF0225_high_24
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 28595635 - 28595930
Alignment:
| Q |
1 |
caacaatatcataatatatgacatatttacatttataatgatgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctaccattgct |
100 |
Q |
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| T |
28595635 |
caacaatatcataatatatgacatatttacatttataatcatgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctaccattgct |
28595734 |
T |
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| Q |
101 |
agtaaaa-gtttggccaattcagaccttccaaaatttacagatgatctaacaactcttatatcccattttaccaataaaggtcttactctcaaagatatg |
199 |
Q |
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| T |
28595735 |
agtaaaaagtttggccaattcagaccttccaaaatttacagatgatctaacaactctaatatcccattttaccaataaaggtcttactctcaaagatatg |
28595834 |
T |
|
| Q |
200 |
gtgactttatctggtaagttcatcactaaccca---nnnnnnncaaacatgcaaatctttatatttgtgtatatgactaatttgtaaacctatgct |
292 |
Q |
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| T |
28595835 |
gttactttatctggtaagttcatcactaacccatttttttttcaaaacatggaaatctttatatttgtgtatatgactaatttgtaaacctatgct |
28595930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 32493873 - 32494151
Alignment:
| Q |
18 |
atgacatatttacatttataatgatgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagtaaaagtttggccaa |
117 |
Q |
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| T |
32493873 |
atgacatatttacatttataatgatgcaggtgggtggtccgtcatggacggtaaaactcggaagaagagactccaccgttgctagcaaaagtcaggccaa |
32493972 |
T |
|
| Q |
118 |
ttcagaccttccaaaatttacagatgatctaacaactcttatatcccattttaccaataaaggtcttactctcaaagatatggtgactttatctggtaag |
217 |
Q |
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| T |
32493973 |
ttcagaccttccaaaatttacggatgatctaacaactcttatagcccattttaccaataaaggtcttactctcaaagatatggttactttatctggtaag |
32494072 |
T |
|
| Q |
218 |
ttcatcactaacccannnnnnncaaacatgcaaa----tctttatatttgtgtatatgactaatttgtaaacctatgct |
292 |
Q |
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| T |
32494073 |
ttcatcactgacccatttgtttcaaacatgcacatgtttatttatatttgtgtgtatggctgatttataaacctatgct |
32494151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 39 - 170
Target Start/End: Complemental strand, 28592312 - 28592181
Alignment:
| Q |
39 |
tgatgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagtaaaagtttggccaattcagaccttccaaaatttac |
138 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| || || ||||||||||||||| | |||||||| |||||| |
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| T |
28592312 |
tgatgcaggtgggtggtccatcatggacggtaaaacttggacggagagactctaccacagcaagcaaaagtttggccaatactgaccttccgttatttac |
28592213 |
T |
|
| Q |
139 |
agatgatctaacaactcttatatcccatttta |
170 |
Q |
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|| ||||| |||||||||||||| ||||||| |
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| T |
28592212 |
ggacgatcttacaactcttatatctcatttta |
28592181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 50 - 170
Target Start/End: Complemental strand, 28587203 - 28587083
Alignment:
| Q |
50 |
ggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagtaaaagtttggccaattcagaccttccaaaatttacagatgatctaa |
149 |
Q |
| |
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||||| || |||||||| |||||||||||||||||||||||||| | || || ||||||||||||||| | |||||||| ||||||||| ||||| | |
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| T |
28587203 |
ggtggcccgtcatggacagtaaaacttggaagaagagactctacaacagcaagcaaaagtttggccaataccgaccttccgttatttacagacgatctta |
28587104 |
T |
|
| Q |
150 |
caactcttatatcccatttta |
170 |
Q |
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||||||||||||| ||||||| |
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| T |
28587103 |
caactcttatatctcatttta |
28587083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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