View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0225_high_28 (Length: 279)
Name: NF0225_high_28
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 29 - 259
Target Start/End: Original strand, 5697494 - 5697725
Alignment:
| Q |
29 |
aataatatgcataaaatgcctccttcaatcggtcgtgattgatgactggtacttttcagagaagatagatagttggtcttaaattcttaatgcttctgtc |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5697494 |
aataatatgcataaaatgcctccttcaatcggtcgtgattgatgactagtacttttcagagaagatagatagttggtcttaaattcttaatgcttctgtc |
5697593 |
T |
|
| Q |
129 |
taagtgatttagattgcgtgcaatcacaatcccatgcagtctcaaattggttctcatttcaattaaaattttgatatttttaaaatctaaaataccgaac |
228 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5697594 |
taagtgatttagattgcgcgcaatcacaatcccatgcagtctcaaattggttctcatttcaattaaaattttgatatttttaaaatctaaaataccaaac |
5697693 |
T |
|
| Q |
229 |
ttgaaatttggatc-tctgatcatgatgatgt |
259 |
Q |
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|||||||||||||| ||||||||||||||||| |
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| T |
5697694 |
ttgaaatttggatcttctgatcatgatgatgt |
5697725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 12711621 - 12711582
Alignment:
| Q |
196 |
attttgatatttttaaaatctaaaataccgaacttgaaat |
235 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |||| |
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| T |
12711621 |
attttaatatttttaaaatctaaaataccgaacttaaaat |
12711582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 12772871 - 12772832
Alignment:
| Q |
196 |
attttgatatttttaaaatctaaaataccgaacttgaaat |
235 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |||| |
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|
| T |
12772871 |
attttaatatttttaaaatctaaaataccgaacttaaaat |
12772832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 39745567 - 39745614
Alignment:
| Q |
194 |
aaattttgat-atttttaaaatctaaaataccgaacttgaaatttgga |
240 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||| |||| |
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|
| T |
39745567 |
aaattttgattattttttaaatctaaaataccgaacttgaaatctgga |
39745614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 32263810 - 32263762
Alignment:
| Q |
196 |
attttgatattttta-aaatctaaaataccgaacttgaaatttggatct |
243 |
Q |
| |
|
||||||||||||| | ||| |||||||||||||||||||||||||||| |
|
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| T |
32263810 |
attttgatattttaagaaaattaaaataccgaacttgaaatttggatct |
32263762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 30959241 - 30959197
Alignment:
| Q |
196 |
attttgatatttttaaaatctaaaataccgaacttgaaatttgga |
240 |
Q |
| |
|
||||| || |||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
30959241 |
attttaatttttttaaagtctaaaataccgagcttgaaatttgga |
30959197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 30975053 - 30975009
Alignment:
| Q |
196 |
attttgatatttttaaaatctaaaataccgaacttgaaatttgga |
240 |
Q |
| |
|
||||| || |||||||| ||||||||||||| ||||||||||||| |
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|
| T |
30975053 |
attttaatttttttaaagtctaaaataccgagcttgaaatttgga |
30975009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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