View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0225_high_36 (Length: 253)
Name: NF0225_high_36
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_high_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 31881403 - 31881630
Alignment:
| Q |
1 |
ttaaaccgaacttaattacgaataaaaatatcaatttgatcctattatcatgtat----ttgatccgtgaacaataaaaatataattggtctctatannn |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31881403 |
ttaaaccgaacttaattacgaataaaaatatcaatttgatcctactatcatgtatgtatttgattcgtgaacaataaaaatataattggtctctatactt |
31881502 |
T |
|
| Q |
97 |
nnnnnaatacatcaagctagtttggaaactatcatnnnnnnnnnnnncagtttttaaaataattaaggaactaatttgacggattaatgatattttaggt |
196 |
Q |
| |
|
||||||||||||||||| |||||||| ||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31881503 |
tttttaatacatcaagctagttcggaaactaccattctctctctctcctgtttttaaaataattaagggactaatttgacggattaatgatattttaggt |
31881602 |
T |
|
| Q |
197 |
ggagaggtagtagtgtttaggtaagatt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
31881603 |
ggagaggtagtagtgtttaggtaagatt |
31881630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 31885572 - 31885785
Alignment:
| Q |
1 |
ttaaaccgaacttaattacgaataaaaatatcaatttgatcctattatcatgtatttgatccgtgaacaataaaaatataattggtctctatannnnnnn |
100 |
Q |
| |
|
||||||||||||||||||| ||| ||| |||||||||||| | | | |||| |||||||||||||||| ||| ||||||||||| |||||||| |
|
|
| T |
31885572 |
ttaaaccgaacttaattacaaattaaa-tatcaatttgataccagtctcatctatttgatccgtgaactatagaaatataattgatctctatactttttt |
31885670 |
T |
|
| Q |
101 |
naatacatcaagctagtttggaaactatcatnnnnnnnnnnnncagtttttaaaataattaaggaactaatttgacggattaatgatattttaggtggag |
200 |
Q |
| |
|
|||||| |||||||||| |||||| ||| | |||||||||| |||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
31885671 |
taatacaccaagctagttcctaaactaccattctctctc----ctgtttttaaaacaattaagggactaatttgatggattaatgatattttaggtggag |
31885766 |
T |
|
| Q |
201 |
aggtagtagtgtttaggta |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
31885767 |
aggtagtagtgtttaggta |
31885785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 12359 times since January 2019
Visitors: 8218