View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0225_high_37 (Length: 253)
Name: NF0225_high_37
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_high_37 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 14331045 - 14331287
Alignment:
| Q |
1 |
tttattggcctgttccaacagttactcattatgtggtttgcgtttttgtggtttgcatttttgctgttcttgagttgctgtttatcaggactatatatct |
100 |
Q |
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| T |
14331045 |
tttattggcctgttccaacaggtactcattatgtggtttgcgtttttgtggtttgcattttcgctgttcttgagttgttgtttatcaggactatatatct |
14331144 |
T |
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| Q |
101 |
tattaggatctttggctagatttacacccttatgtattcaaaacctgagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14331145 |
tattaggatctttggctagatttacacccttatgtattcaaaacctgagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataac |
14331244 |
T |
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| Q |
201 |
gttgaactattgtagtttatgttgaactttgttgtgttctgtg |
243 |
Q |
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| T |
14331245 |
gttgaactattgtaatttatgttgaactttgttgtgttttgtg |
14331287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 21724517 - 21724759
Alignment:
| Q |
1 |
tttattggcctgttccaacagttactcattatgtggtttgcgtttttgtggtttgcatttttgctgttcttgagttgctgtttatcaggactatatatct |
100 |
Q |
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| T |
21724517 |
tttattggcctgttccaacaggtactcattatgtggtttgcgtttttgtggtttgcattttcgctgttcttgagttgttgtttatcaggactatatatct |
21724616 |
T |
|
| Q |
101 |
tattaggatctttggctagatttacacccttatgtattcaaaacctgagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataac |
200 |
Q |
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| T |
21724617 |
tattaggatctttggctagatttacacccttatgtattcaaaacctgagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataac |
21724716 |
T |
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| Q |
201 |
gttgaactattgtagtttatgttgaactttgttgtgttctgtg |
243 |
Q |
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| T |
21724717 |
gttgaactattgtaatttatgttgaactttgttgtgttttgtg |
21724759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 47 - 243
Target Start/End: Original strand, 21804284 - 21804480
Alignment:
| Q |
47 |
tgtggtttgcatttttgctgttcttgagttgctgtttatcaggactatatatcttattaggatctttggctagatttacacccttatgtattcaaaacct |
146 |
Q |
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| T |
21804284 |
tgtggtttgcattttcgctgttcttgagttgttgtttatcaggactatatatcttattaggatctttggctagatttacacccttatgtattcaaaacct |
21804383 |
T |
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| Q |
147 |
gagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtagtttatgttgaactttgttgtgttctgtg |
243 |
Q |
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| T |
21804384 |
gagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtaatttatgttgaactttgttgtgttttgtg |
21804480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 47 - 245
Target Start/End: Original strand, 9987691 - 9987889
Alignment:
| Q |
47 |
tgtggtttgcatttttgctgttcttgagttgctgtttatcaggactatatatcttattaggatctttggctagatttacacccttatgtattcaaaacct |
146 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9987691 |
tgtggtttgcatttttgctgttcttgagttgctgtttattaggactatatatcttattgggatctttggctagatttacacccttatgtattcaaaacct |
9987790 |
T |
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| Q |
147 |
gagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtagtttatgttgaactttgttgtgttctgtgct |
245 |
Q |
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| T |
9987791 |
gagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtagtttatgttgaactttgttgtgttttgtgct |
9987889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 6061798 - 6061728
Alignment:
| Q |
123 |
tacacccttatgtattcaaaacctgagtactagaatgctaatttcttgaatggtgttgagatattttaaca |
193 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
6061798 |
tacacccttatttattcaaaacctgagtactacaatgctaatttcttgaatggtgttgagatcttttaaca |
6061728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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