View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0225_high_55 (Length: 204)

Name: NF0225_high_55
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0225_high_55
NF0225_high_55
[»] chr5 (2 HSPs)
chr5 (2-197)||(39184736-39184931)
chr5 (55-189)||(8730292-8730424)
[»] chr1 (2 HSPs)
chr1 (44-189)||(42373538-42373682)
chr1 (119-164)||(17032951-17032996)
[»] chr4 (1 HSPs)
chr4 (36-153)||(16501182-16501300)
[»] chr2 (3 HSPs)
chr2 (35-161)||(31902910-31903036)
chr2 (7-161)||(39339357-39339511)
chr2 (55-189)||(25505483-25505615)
[»] chr3 (3 HSPs)
chr3 (79-192)||(25595103-25595216)
chr3 (40-161)||(17501759-17501880)
chr3 (105-189)||(5556047-5556132)
[»] chr8 (1 HSPs)
chr8 (37-189)||(9519052-9519205)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 4e-83; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 2 - 197
Target Start/End: Complemental strand, 39184931 - 39184736
Alignment:
Q  2 gtttgctccatgtcaccggcagcatcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccaagttttgtagttgtgtttcggctt 101  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| |||    
T  39184931 gttttctccatgtcaccggcagctgcatttctctgatttaggttgtgattctgcttcaaactggcgtcgttgcctatgttttgtagttgtgtttcgtctt 39184832  T
Q  102 cctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttggcttgtgggtattttcttcg 197  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  39184831 cctatatatatgttttgtgttgctgtctgttttcttggtgaggcggtttggcggcgtagttttggctctatcgttggcttgtgggtatattcttcg 39184736  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 189
Target Start/End: Original strand, 8730292 - 8730424
Alignment:
Q  55 cttcaaactggcgtcgttgcccaagttttgtagttgtgtttcggcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggca 154  Q
    ||||| |||||||||| |||||  ||||||| |||  | |||| |||||| | ||| | |||| |||||||| |||||||| || |||| | ||||||||    
T  8730292 cttcagactggcgtcgctgcccgtgttttgttgtttggcttcgtcttcctctggatctatttt-tgttgctgcctgttttcatg-tgagacagtttggca 8730389  T
Q  155 gcgtagttttggctctatcgttggcttgtgggtat 189  Q
    | |||||| || |||||||||||| | ||||||||    
T  8730390 gtgtagttctgtctctatcgttggttggtgggtat 8730424  T

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Target: chr1 (Bit Score: 70; Significance: 9e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 42373538 - 42373682
Alignment:
Q  44 ttgtgattccgcttcaaactggcgtcgttgcccaagttttgtagttgtgtttcggcttcctatagatatgttttgtgttgctgtctgttttcttggtgag 143  Q
    ||||||||||||||||||| || ||||||||||  |||||| |||||||||||| |||||||| ||| |||| | |||| ||| ||||||||||||||||    
T  42373538 ttgtgattccgcttcaaaccggtgtcgttgcccgtgttttgaagttgtgtttcgtcttcctatcgatctgttctatgttactgcctgttttcttggtgag 42373637  T
Q  144 gcggtttggcagcgtagttttggctctatcgttggcttgtgggtat 189  Q
    | |||||| | ||||||||||| ||||||| |||| ||||||||||    
T  42373638 gtggtttgacggcgtagttttgtctctatctttgg-ttgtgggtat 42373682  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 17032951 - 17032996
Alignment:
Q  119 tgttgctgtctgttttcttggtgaggcggtttggcagcgtagtttt 164  Q
    ||||||||  ||||||||||||||| ||||||||||| ||||||||    
T  17032951 tgttgctgcttgttttcttggtgagacggtttggcagtgtagtttt 17032996  T

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Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 36 - 153
Target Start/End: Original strand, 16501182 - 16501300
Alignment:
Q  36 gatttaggttgtgattccgcttcaaactggcgtcgttgcccaagttttgtagttgtgtttcggcttcctatagatatgt-tttgtgttgctgtctgtttt 134  Q
    ||||| |||||||||||| |||||||| ||||||| |||||| ||| ||| ||||  ||| | |||||| || || ||| ||||||| || |||||||||    
T  16501182 gatttgggttgtgattccacttcaaaccggcgtcgctgcccatgttgtgttgttggttttagtcttcctctaaatttgtgtttgtgtggccgtctgtttt 16501281  T
Q  135 cttggtgaggcggtttggc 153  Q
    |||||||||||||||||||    
T  16501282 cttggtgaggcggtttggc 16501300  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 31903036 - 31902910
Alignment:
Q  35 tgatttaggttgtgattccgcttcaaactggcgtcgttgcccaagttttgtagttgtgtttcggcttcctatagatatgt-tttgtgttgctgtctgttt 133  Q
    |||| ||||||||| ||||||||||||| ||||||| |||||  ||||||| |||| |||||| |||||| ||||| | | || |||||||||| || ||    
T  31903036 tgatctaggttgtgtttccgcttcaaaccggcgtcgctgcccgtgttttgttgttgggtttcgtcttcctctagatctatgttagtgttgctgtttg-tt 31902938  T
Q  134 tcttggtgaggcggtttggcagcgtagt 161  Q
    ||||| ||||||  |||||| |||||||    
T  31902937 tcttgctgaggctatttggcggcgtagt 31902910  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 161
Target Start/End: Complemental strand, 39339511 - 39339357
Alignment:
Q  7 ctccatgtcaccggcagcatcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccaagttttgtagttgtgtttcggcttcctat 106  Q
    |||| |||||||||| ||  | ||||| |||||| ||||||| || | |||||||| | ||||| ||| |  ||||||| ||||  ||||  |||||| |    
T  39339511 ctccttgtcaccggcggccgcctttctatgattttggttgtgttttcacttcaaaccgacgtcgctgctcgtgttttgttgttggatttcctcttcctct 39339412  T
Q  107 agatatgt-tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagt 161  Q
    |||| | | |||||||||||||||| |||||||||||||  ||||||| |||||||    
T  39339411 agatctatatttgtgttgctgtctg-tttcttggtgaggatgtttggcggcgtagt 39339357  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 189
Target Start/End: Complemental strand, 25505615 - 25505483
Alignment:
Q  55 cttcaaactggcgtcgttgcccaagttttgtagttgtgtttcggcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggca 154  Q
    ||||| |||||||||| |||||  ||||||| |||  | |||| |||||| | ||| | |||| |||||||| |||||||| || |||| | ||||||||    
T  25505615 cttcagactggcgtcgctgcccgtgttttgttgtttggcttcgtcttcctctggatctatttt-tgttgctgcctgttttcatg-tgagacagtttggca 25505518  T
Q  155 gcgtagttttggctctatcgttggcttgtgggtat 189  Q
    | |||||| || |||||||||||| | ||||||||    
T  25505517 gtgtagttctgtctctatcgttggttggtgggtat 25505483  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 192
Target Start/End: Complemental strand, 25595216 - 25595103
Alignment:
Q  79 gttttgtagttgtgtttcggcttcctatagatatgtttt-gtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttg 177  Q
    ||||||| ||| ||||||| | |||| ||||| |||||| |||||||||  ||||| |||||||||||||||||||| |||||||| | |||||||| |     
T  25595216 gttttgttgttatgtttcgtcatcctctagatttgtttttgtgttgctgcttgttt-cttggtgaggcggtttggcaacgtagtttcgtctctatcgctc 25595118  T
Q  178 gcttgtgggtatttt 192  Q
    | || ||||||||||    
T  25595117 gtttatgggtatttt 25595103  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 161
Target Start/End: Complemental strand, 17501880 - 17501759
Alignment:
Q  40 taggttgtgattccgcttcaaactggcgtcgttgcccaagttttgtagttgtgtttcggcttcctatagatatgt-tttgtgttgctgtctgttttcttg 138  Q
    ||||||||| ||||||||||||||| |||| ||| ||  ||||||| |||   ||||| |||||| ||||| | | |||||||||||  || |||| |||    
T  17501880 taggttgtgtttccgcttcaaactgacgtcattgtccgtgttttgttgttagatttcgtcttcctctagatctatatttgtgttgcttcctatttt-ttg 17501782  T
Q  139 gtgaggcggtttggcagcgtagt 161  Q
    ||||||  |||||||||||||||    
T  17501781 gtgaggatgtttggcagcgtagt 17501759  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 189
Target Start/End: Original strand, 5556047 - 5556132
Alignment:
Q  105 atagatatgt-tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttggcttgtgggtat 189  Q
    |||||||||| ||||||||||||  ||||||| ||||| ||||||| ||| || | |||||| |||| ||| ||| ||||||||||    
T  5556047 atagatatgtgtttgtgttgctgcttgttttcatggtgtggcggttaggctgcattgttttgtctctgtcgctggtttgtgggtat 5556132  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 37 - 189
Target Start/End: Original strand, 9519052 - 9519205
Alignment:
Q  37 atttaggttgtgattccgcttcaaactggcgtcgttgcccaagttttgtagttgtgtttcggcttcctatagatatgt-tttgtgttgctgtctgttttc 135  Q
    |||| ||||||| | |||||||||||  |||||| |||||  ||||||| |||| |||||| ||| || ||||| ||| ||||| ||||||| |||||||    
T  9519052 atttgggttgtgttcccgcttcaaaccagcgtcgctgcccgtgttttgttgttgggtttcgtctttctctagatttgtgtttgtattgctgt-tgttttc 9519150  T
Q  136 ttggtgaggcggtttggcagcgtag-ttttggctctatcgttggcttgtgggtat 189  Q
     |||||||| || ||||| | |||| ||||| | |||||| ||| ||||||||||    
T  9519151 atggtgaggtgggttggcggtgtagtttttgtccctatcgctggtttgtgggtat 9519205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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