View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0225_high_56 (Length: 204)

Name: NF0225_high_56
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0225_high_56
NF0225_high_56
[»] chr3 (1 HSPs)
chr3 (21-162)||(1182049-1182193)
[»] chr7 (5 HSPs)
chr7 (46-175)||(8035233-8035366)
chr7 (46-175)||(38111126-38111259)
chr7 (46-175)||(45034130-45034263)
chr7 (46-175)||(46045429-46045562)
chr7 (47-141)||(19303982-19304080)
[»] chr5 (2 HSPs)
chr5 (46-175)||(32386010-32386143)
chr5 (46-175)||(14024457-14024590)
[»] chr8 (3 HSPs)
chr8 (46-175)||(41999806-41999939)
chr8 (46-175)||(45092963-45093096)
chr8 (46-175)||(9215745-9215878)
[»] chr4 (3 HSPs)
chr4 (46-175)||(28945820-28945953)
chr4 (46-175)||(1368956-1369089)
chr4 (46-154)||(36859260-36859372)
[»] chr2 (3 HSPs)
chr2 (46-175)||(11996187-11996320)
chr2 (47-175)||(24126868-24127000)
chr2 (46-175)||(42865439-42865572)
[»] chr1 (1 HSPs)
chr1 (46-175)||(6293538-6293671)


Alignment Details
Target: chr3 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 1182193 - 1182049
Alignment:
Q  21 gtatatagtttccttttgatgaggacttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaataga 117  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    ||||||||||| |||||||||||||||||||||||    
T  1182193 gtatatagtttccttttgatgaggacttctatgtatctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcatatttcaaaataga 1182094  T
Q  118 tttgtttcaccaattccacaaatactagcatgttgtcatgaaagt 162  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  1182093 tttgtttcaccaattccataaatactagcatgttgtcatgaaagt 1182049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 8035366 - 8035233
Alignment:
Q  46 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 141  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||    
T  8035366 cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 8035267  T
Q  142 ctagcatgttgtcatgaaagttgtatgccaagta 175  Q
    | | ||||||||||||||||| || |||||||||    
T  8035266 ccaacatgttgtcatgaaagtagtctgccaagta 8035233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 46 - 175
Target Start/End: Original strand, 38111126 - 38111259
Alignment:
Q  46 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 141  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||    
T  38111126 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 38111225  T
Q  142 ctagcatgttgtcatgaaagttgtatgccaagta 175  Q
    | | ||||||||||||||||| || |||||||||    
T  38111226 ccaacatgttgtcatgaaagtagtctgccaagta 38111259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 46 - 175
Target Start/End: Original strand, 45034130 - 45034263
Alignment:
Q  46 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 141  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||| |||||||| |||||||||| |||| ||||||| |||||||||||||||    
T  45034130 cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagaattgtttcgccaattccacaaata 45034229  T
Q  142 ctagcatgttgtcatgaaagttgtatgccaagta 175  Q
    | | |||||| |||||||||| || |||||||||    
T  45034230 ccaacatgttatcatgaaagtagtctgccaagta 45034263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 46045562 - 46045429
Alignment:
Q  46 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 141  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||    
T  46045562 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 46045463  T
Q  142 ctagcatgttgtcatgaaagttgtatgccaagta 175  Q
    | | ||||||||||||||||| || |||||||||    
T  46045462 ccaacatgttgtcatgaaagtagtctgccaagta 46045429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 19303982 - 19304080
Alignment:
Q  47 ttctatctctctagtaaacttttgaattaccag---tgaattgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 141  Q
    |||||| ||||  ||||||||||||||||| ||   || |||| | |||| |||||||| |||||||||| |||||||||| | |||||||||||||||    
T  19303982 ttctatgtctcaggtaaacttttgaattactagcgttggattgttcggtctttgaaatcctatttcaaaaatagatttgttccgccaattccacaaata 19304080  T

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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 32386143 - 32386010
Alignment:
Q  46 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 141  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||    
T  32386143 cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 32386044  T
Q  142 ctagcatgttgtcatgaaagttgtatgccaagta 175  Q
    | | ||||||||||||||||| || |||||||||    
T  32386043 ccaacatgttgtcatgaaagtagtctgccaagta 32386010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 14024590 - 14024457
Alignment:
Q  46 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 141  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||    
T  14024590 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 14024491  T
Q  142 ctagcatgttgtcatgaaagttgtatgccaagta 175  Q
    | | ||||||||||||||||| || |||||||||    
T  14024490 ccaacatgttgtcatgaaagtagtctgccaagta 14024457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 2e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 41999939 - 41999806
Alignment:
Q  46 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 141  Q
    |||||||||||||||||||||||||||||| |||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||    
T  41999939 cttctatctctctagtaaacttttgaattaacagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 41999840  T
Q  142 ctagcatgttgtcatgaaagttgtatgccaagta 175  Q
    | | ||||||||||||||||| || |||||||||    
T  41999839 ccaacatgttgtcatgaaagtagtctgccaagta 41999806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 45093096 - 45092963
Alignment:
Q  46 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 141  Q
    ||||||||||||||||||||||||||||||| ||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||    
T  45093096 cttctatctctctagtaaacttttgaattacgagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 45092997  T
Q  142 ctagcatgttgtcatgaaagttgtatgccaagta 175  Q
    | | ||||||||| ||||| | || |||||||||    
T  45092996 ccaacatgttgtcgtgaaattagtctgccaagta 45092963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 9215878 - 9215745
Alignment:
Q  46 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 141  Q
    |||||||||||||||| ||||||||||| |||||||    ||||||| ||| |||||||| |||||||||| || ||||||||| |||||||||||||||    
T  9215878 cttctatctctctagtcaacttttgaataaccagtgttggattgcttagtctttgaaatcctatttcaaaaatatatttgtttcgccaattccacaaata 9215779  T
Q  142 ctagcatgttgtcatgaaagttgtatgccaagta 175  Q
    | |||||| |||||||||||| || | |||||||    
T  9215778 ccagcatgatgtcatgaaagtagtctcccaagta 9215745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 2e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 46 - 175
Target Start/End: Original strand, 28945820 - 28945953
Alignment:
Q  46 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 141  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||    
T  28945820 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 28945919  T
Q  142 ctagcatgttgtcatgaaagttgtatgccaagta 175  Q
    | | ||||||||||||||||| || |||||||||    
T  28945920 ccaacatgttgtcatgaaagtagtctgccaagta 28945953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 1369089 - 1368956
Alignment:
Q  46 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 141  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||    
T  1369089 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 1368990  T
Q  142 ctagcatgttgtcatgaaagttgtatgccaagta 175  Q
    | | ||||||||||||||||| || |||||||||    
T  1368989 ccaacatgttgtcatgaaagtagtctgccaagta 1368956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 36859260 - 36859372
Alignment:
Q  46 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttc-aaaatagatttgtttcaccaattccacaaata 141  Q
    ||||||| ||||||||||||||||||||||| |||||   |||||| |||| |||||||| |||||| |||||||||||||||  |||||||||||||||    
T  36859260 cttctatttctctagtaaacttttgaattactagtgatggattgctcggtctttgaaatcctatttcaaaaatagatttgtttagccaattccacaaata 36859359  T
Q  142 ctagcatgttgtc 154  Q
      | |||||||||    
T  36859360 tcaacatgttgtc 36859372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 2e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 46 - 175
Target Start/End: Original strand, 11996187 - 11996320
Alignment:
Q  46 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 141  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||| ||| |||| |||||||||| |||||||||||| |||||||||||||||    
T  11996187 cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttggaatcctatttcaaaaatagatttgtttcgccaattccacaaata 11996286  T
Q  142 ctagcatgttgtcatgaaagttgtatgccaagta 175  Q
    | | ||||||||||||||||| || |||||||||    
T  11996287 ccaacatgttgtcatgaaagtagtctgccaagta 11996320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 47 - 175
Target Start/End: Original strand, 24126868 - 24127000
Alignment:
Q  47 ttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaatac 142  Q
    |||||||||||||||||||||||||||||||||||    ||||| ||||| ||||||||||||||||||| |||||||||||| ||||||||| ||||||    
T  24126868 ttctatctctctagtaaacttttgaattaccagtgttggattgcctggtctttgaaatcatatttcaaaaatagatttgtttcgccaattccataaatac 24126967  T
Q  143 tagcatgttgtcatgaaagttgtatgccaagta 175  Q
     | ||||||||||||||||| || |||||||||    
T  24126968 caacatgttgtcatgaaagtagtctgccaagta 24127000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 42865572 - 42865439
Alignment:
Q  46 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 141  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||    
T  42865572 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 42865473  T
Q  142 ctagcatgttgtcatgaaagttgtatgccaagta 175  Q
    | | ||||||||||||||||| || |||||||||    
T  42865472 ccaacatgttgtcatgaaagtagtctgccaagta 42865439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 6293671 - 6293538
Alignment:
Q  46 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 141  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||| || |||||    
T  6293671 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattacataaata 6293572  T
Q  142 ctagcatgttgtcatgaaagttgtatgccaagta 175  Q
    | | ||||||||||||||||| || |||||||||    
T  6293571 ccaacatgttgtcatgaaagtagtctgccaagta 6293538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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