View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0225_low_1 (Length: 638)
Name: NF0225_low_1
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 84 - 537
Target Start/End: Complemental strand, 38102059 - 38101606
Alignment:
| Q |
84 |
atcatcaacataaggagtcacccttgcaccaaagcctgttttaaccaatgctctcagtccagattggaagtcagagatgtaaaaatcaaccacatgcctc |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38102059 |
atcatcaacataaggagtcacccttgcaccaaagcctgttttaaccaatgctctcagtccagattggaagtcagagatgtaaaaatcaaccacatgcctc |
38101960 |
T |
|
| Q |
184 |
tgcattgaatnnnnnnnttaaggaaaaatattaaagagttataagtttcatatattaacctgccaaagtccccaaaatatacaatttgcattcttatata |
283 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38101959 |
tgcattgaataaaaaaattaaggaaaaatattaaagagttataagtttcatatattaacctgccaaagtccccaaaatatacaatttgcattcttatata |
38101860 |
T |
|
| Q |
284 |
ggcgtgtctactccacattaaatgagatttgaatccaatcaacactttcataaaggagcaaatacaatactgccataacatcagacatgaagacatacta |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38101859 |
ggcgtgtctactccacattaaatgagatttgaatccaatcaacactttcataaaggagcaaatacaatactgccataacatcagacatgaagacatacta |
38101760 |
T |
|
| Q |
384 |
cctaataagggactattcttgatgatcaaagtcaagtaaaagccaccataataaatccccagtcaaaagaaagaaagaagtgcattcagtgttagaagag |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38101759 |
cctaataagggactattcttgatgatcaaagtcaagtaaaagccaccataataaatccccagtcaaaagaaagaaagaagtgcattcagtgttagaagag |
38101660 |
T |
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| Q |
484 |
aaatgacaaaaaccatcttttttgaaaacttgcaatttcagtttatatatttct |
537 |
Q |
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| T |
38101659 |
aaatgacaaaaaccatcttttttgaaaacttgcaatttcagtttatatatttct |
38101606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 84 - 431
Target Start/End: Original strand, 300415 - 300748
Alignment:
| Q |
84 |
atcatcaacataaggagtcacccttgcaccaaagcctgttttaaccaatgctctcagtccagattggaagtcagagatgtaaaaatcaaccacatgcctc |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
300415 |
atcatcaacataaggagtcacccttgcaccaaaccctgttttaaccaaagctctcaatccagattggaagtcagagatgtaaaaatcaaccacatgcctc |
300514 |
T |
|
| Q |
184 |
tgcattgaatnnnnnnnttaaggaaaaatattaaagagttataagtttcatatattaacctgccaaagtccccaaaatatacaatttgcattcttatata |
283 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
300515 |
tgcattgaatagaaaa-ttaaggaaaaata-------------agtttcatatattaaccagccaaagtccccaaaatatacaatttgcattctgatata |
300600 |
T |
|
| Q |
284 |
ggcgtgtctactccacattaaatgagatttgaatccaatcaacactttcataaaggagcaaatacaatactgccataacatcagacatgaagacatacta |
383 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
300601 |
ggcgtgtctactccacagtaaatgagatttgaatccaatcaatactttcataaaggagcaaatacaatactgccataacatcagacatgaagacatacta |
300700 |
T |
|
| Q |
384 |
cctaataagggactattcttgatgatcaaagtcaagtaaaagccacca |
431 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
300701 |
cctaataagggactattcttgatgatcaaagtcaagtaaaagccacca |
300748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 1322641 - 1322541
Alignment:
| Q |
85 |
tcatcaacataaggagtcacccttgcaccaaagcctgttttaaccaatgctctcagtccagattggaagtcagagatgtaaaaatcaaccacatgcctct |
184 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||| || || || |||||||| || | ||||| ||||| || ||||||||||||||||||||| |||||| |
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| T |
1322641 |
tcatcaacataaggggtcactcttgctccatgaccagtcttgaccaatgcccttaaaccagactggaaatctgagatgtaaaaatcaaccacacgcctct |
1322542 |
T |
|
| Q |
185 |
g |
185 |
Q |
| |
|
| |
|
|
| T |
1322541 |
g |
1322541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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