View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0225_low_12 (Length: 416)
Name: NF0225_low_12
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 387
Target Start/End: Original strand, 41610126 - 41610496
Alignment:
| Q |
16 |
atgatggagaaagtgggaagaatgaagagatttggtagggaaaaactttgaagagtttannnnnnngcacaatgcaaaattctcttaatttgaagagcag |
115 |
Q |
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| T |
41610126 |
atgatggaggaagtgggaagaatgaagagatttggtagggaaaaactttgaagagtttatttttttgcacaatgcaaaattctcttaatttgaagagcag |
41610225 |
T |
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| Q |
116 |
atacattttttaaatccaccatatgttgttatagcgctctctataaattaaaaatatatctatcagaagtttttaattgtcattctacaaaagaactcct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41610226 |
atacattttttaaatccaccatatgttgttatagcgctctctataaattaaaaatatatctatcagaagtttttaattgtcattctacaaaagaacccct |
41610325 |
T |
|
| Q |
216 |
catttaaataatgggtgatatatttctttttattttctcatcctcccccgcaccaagctcccaacaaggcccttaaccaatgaatctaaatatgcatata |
315 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41610326 |
cattcaaataatgggtgatatatttctttttgttttctcatcct-ccccgcaccaagctcccaacaaggcccttaaccaatgaatctaaatatgcatata |
41610424 |
T |
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| Q |
316 |
ataattaatctaatgactttaaaatataatatggatgatggaccacgtaaagaagtagttcacaatagattc |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41610425 |
ctaattaatctaatgactttaaaatataatatggatgatgaaccacgtaaagaagtagttcacaatagattc |
41610496 |
T |
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