View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0225_low_16 (Length: 400)
Name: NF0225_low_16
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 4 - 372
Target Start/End: Original strand, 11551903 - 11552282
Alignment:
| Q |
4 |
ataatacttggacgatcgtcaattcaaagatgcattattttaaatctcacactcacttgaaaacttatactaacttgaaggtcgaagtgttaatacacca |
103 |
Q |
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| T |
11551903 |
ataatacttggacgatcgtcaattcaaagatgcattattttaaatctcacactcacttgaaaacttatactaacttgaaggtcgaagtgttaatacacca |
11552002 |
T |
|
| Q |
104 |
tcgaacatcaatttcattgtagattccgaccaagctcaatcaatcgagaggcatttcttccactgatagcgaatgagcgagtctctaagtttagttcaaa |
203 |
Q |
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| T |
11552003 |
tcgaacatcaatttcattgtagattccgaccaagctcaatcaatcgagaggcatttcttccactgatagcgaataagcgagtctctaagtttagttcaaa |
11552102 |
T |
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| Q |
204 |
acattgagttttgtagtggtggtttatgacttgatgatattcttccatggggattat-----------atgtttaannnnnnnnctctctcgactgttta |
292 |
Q |
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| T |
11552103 |
acattgagttttgtagtggtggtttatgacttgatgatattcttccatggggattattgccttcttcgatgtttaattttttttctctctcgactgttta |
11552202 |
T |
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| Q |
293 |
aagtttagaatagttaaattgtgagttgctttatattgcatgttaagaatccagtaatttattctatttatgaaagcttg |
372 |
Q |
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| T |
11552203 |
aagtttagaatagttaaattgtgagttgctttatattgcatgttaagaatccagtaatttattctatttatgaaagcttg |
11552282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 11434189 - 11434061
Alignment:
| Q |
20 |
cgtcaattcaaagatgcattattttaaatctcacactcacttgaaaacttatactaacttgaaggtcgaagtgtt----aatacaccatcgaacatcaat |
115 |
Q |
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| T |
11434189 |
cgtctatttaaatatgcattattttaaatctcacactcacctaaaaaattatattaacttgaaggtcgaagtgttagcaaatacacaaatgaacatcaat |
11434090 |
T |
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| Q |
116 |
ttcattgtagattccgaccaagctcaatc |
144 |
Q |
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| T |
11434089 |
ttcattgtagattccggccaagctcaatc |
11434061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 281 - 357
Target Start/End: Complemental strand, 11434008 - 11433932
Alignment:
| Q |
281 |
ctcgactgtttaaagtttagaatagttaaattgtgagttgctttatattgcatgttaagaatccagtaatttattct |
357 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
11434008 |
ctcgactgtttaaacattagaatagttaaattgtgtgttgctttttattgcatgttaagaatccagtaatttattct |
11433932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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