View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0225_low_18 (Length: 381)
Name: NF0225_low_18
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 29 - 374
Target Start/End: Complemental strand, 11576262 - 11575917
Alignment:
| Q |
29 |
agtttctacgatggttttggaaatggtaatcgtatatttaggtggtctgatcgtagtttctatgtttgaggttttaagagggggtcaatttttacttcac |
128 |
Q |
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| T |
11576262 |
agtttcttcgatggttttggaaatggcaatcgtatatttaggtggtctgattgtagtttctatgtttgaggttttaagaaggggtcaatttttacttcac |
11576163 |
T |
|
| Q |
129 |
agaagaatttgaacatgattgatttaaaggaagatactagacagtttaatatctaagaaagagttagagtagttataatggctgaaggaattctcaaatg |
228 |
Q |
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| T |
11576162 |
agaagaatttgaacatgattgatttaaaggaagatactagacagtttaatatctaagaaagagttagagtagttataatggctgaaggaattctcaaatg |
11576063 |
T |
|
| Q |
229 |
ataattctattccaagagtgccacatttgagattaaaggctcctatgagacaatttacttaggagagtggtattagaaaagcagaatttagtgtacatat |
328 |
Q |
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| T |
11576062 |
ataattctattccaagagtgccacatttgagattaaaggctcctatgagacaatttacttaggagagtggtattagaaaagcagaatttagtgtacatat |
11575963 |
T |
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| Q |
329 |
tttgtggagagtgtcctgaaatggcatcacatcgctccctatgata |
374 |
Q |
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| T |
11575962 |
tttgtggagagtgtcctgaaatggcatcacatcgctccctttgata |
11575917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 14520494 - 14520440
Alignment:
| Q |
227 |
tgataattctattccaagagtgccacatttgagattaaaggctcctatgagacaa |
281 |
Q |
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| T |
14520494 |
tgatcattctgttccaagagtgccaaatttgagattaaaagctcctaagagacaa |
14520440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 14520679 - 14520628
Alignment:
| Q |
113 |
tcaatttttacttcacagaagaatttgaacatgattgatttaaaggaagata |
164 |
Q |
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| T |
14520679 |
tcaatttttccttcacaaaagaatttgaacatgtttggtttagaggaagata |
14520628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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