View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0225_low_25 (Length: 313)

Name: NF0225_low_25
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0225_low_25
NF0225_low_25
[»] chr7 (4 HSPs)
chr7 (20-223)||(49170164-49170367)
chr7 (20-221)||(12911593-12911794)
chr7 (102-221)||(22077858-22077978)
chr7 (24-129)||(10289200-10289305)
[»] chr4 (3 HSPs)
chr4 (20-223)||(55162296-55162499)
chr4 (20-223)||(40459065-40459264)
chr4 (140-213)||(28969093-28969167)
[»] chr1 (5 HSPs)
chr1 (20-222)||(8421708-8421910)
chr1 (20-223)||(338219-338421)
chr1 (140-195)||(9537278-9537335)
chr1 (24-129)||(43407776-43407881)
chr1 (20-129)||(26317317-26317426)
[»] chr5 (3 HSPs)
chr5 (20-223)||(40691016-40691220)
chr5 (20-223)||(30909902-30910107)
chr5 (59-129)||(38001023-38001093)
[»] chr2 (5 HSPs)
chr2 (20-223)||(36732053-36732259)
chr2 (20-223)||(40447592-40447794)
chr2 (20-221)||(18292605-18292809)
chr2 (20-221)||(40729290-40729490)
chr2 (20-129)||(41340680-41340789)
[»] scaffold0041 (2 HSPs)
scaffold0041 (140-209)||(33190-33259)
scaffold0041 (66-131)||(33284-33349)
[»] chr3 (2 HSPs)
chr3 (24-129)||(7337103-7337208)
chr3 (20-129)||(43278256-43278365)
[»] scaffold1838 (1 HSPs)
scaffold1838 (139-195)||(444-502)
[»] chr8 (2 HSPs)
chr8 (154-221)||(44436323-44436389)
chr8 (24-129)||(41958337-41958442)


Alignment Details
Target: chr7 (Bit Score: 171; Significance: 8e-92; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 49170367 - 49170164
Alignment:
Q  20 attcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaa 119  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  49170367 attcttaattatgttttatatgaaagttgtgtatgataatatggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatgttggaaa 49170268  T
Q  120 agaaatgttacannnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatgcattaa 219  Q
    ||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  49170267 agaaatgttacatttttttgatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtgcttgatgatgcattaa 49170168  T
Q  220 tact 223  Q
    ||||    
T  49170167 tact 49170164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 12911794 - 12911593
Alignment:
Q  20 attcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||| || ||||||||||||  ||||||| | ||||| | || |||||||    
T  12911794 attcttaattatgttttatatgaaagttgtgtatgataatgtgatgcgaattgacattttttatattaatatgctttatttattttttttatgttggaaa 12911695  T
Q  120 agaaatgttacannnnnnngatgaattaaag--aagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatgcatt 217  Q
    ||||||||||||       ||||||||||||  || ||||  |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  12911694 agaaatgttaca--tttttgatgaattaaagaaaaaagaactatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcatt 12911597  T
Q  218 aata 221  Q
    ||||    
T  12911596 aata 12911593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 102 - 221
Target Start/End: Original strand, 22077858 - 22077978
Alignment:
Q  102 tttttgtgatcttggaaaagaaatgttacannnnnnngatgaattaaagaa--gagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttg 199  Q
    |||||||| | ||||||||||| |||||||        |||||||||||||  ||||||||||||||||||||||||||||||||| ||||||| |||||    
T  22077858 tttttgtggtgttggaaaagaagtgttacattttttttatgaattaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgatggactttt-ggttg 22077956  T
Q  200 tgtgcttgatgatgcattaata 221  Q
    |||| |||||||||| ||||||    
T  22077957 tgtgtttgatgatgcgttaata 22077978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 10289305 - 10289200
Alignment:
Q  24 ttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaaagaa 123  Q
    |||||||||||||||||||||||||||||||   ||||| |||||| || | | |||||||||| |  |||| ||||||| ||||||| | || |||||     
T  10289305 ttaattatgttttatatgaaagttgtgtatgtggatgtgatgtgaactggtttgttttatattattatgcttgatatgttcttgtgatgtagggaaagag 10289206  T
Q  124 atgtta 129  Q
    ||||||    
T  10289205 atgtta 10289200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 55162296 - 55162499
Alignment:
Q  20 attcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||    
T  55162296 attcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattagtatattttatattaatgcgctttatatgtttttgtgatgttggaaa 55162395  T
Q  120 agaaatgttacannnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatgcattaa 219  Q
    ||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  55162396 agaaatgttacatttttttgatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtgcttgatgatgcattaa 55162495  T
Q  220 tact 223  Q
    ||||    
T  55162496 tact 55162499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 40459065 - 40459264
Alignment:
Q  20 attcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||| ||||||||| |||||||    
T  40459065 attcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatg-ttttgtgatgttggaaa 40459163  T
Q  120 agaaatgttaca-nnnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatgcatta 218  Q
    ||||||||||||        | |||||||||||||||||||||    || ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40459164 agaaatgttacattttctttggtgaattaaagaagagaaagat----atatgagtttgtgaaatgattgacttttggtttgtgtgcttgatgatgcatta 40459259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 28969167 - 28969093
Alignment:
Q  140 atgaattaaagaa--gagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatg 213  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||    
T  28969167 atgaattaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgattgactttt-ggttgtgtgtttcatgatg 28969093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 8421708 - 8421910
Alignment:
Q  20 attcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  8421708 attcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgttcttgtgatgttggaaa 8421807  T
Q  120 agaaatgttacannnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatgcattaa 219  Q
    ||||||||||||       ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  8421808 agaaatgttacatttttttgattaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgactgacttttggtttgtgtgcttgatgatgcattaa 8421907  T
Q  220 tac 222  Q
    |||    
T  8421908 tac 8421910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 338219 - 338421
Alignment:
Q  20 attcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaa 119  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |  |||||||||||||| |||   |||||||    
T  338219 attcttaattatgttttatatgaaagtagtgtatgataatgtggtgtggattgatatattttatattattatgctttatatgtttt-gtggcgttggaaa 338317  T
Q  120 agaaatgttacannnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatgcattaa 219  Q
    ||||||||||||       |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  338318 agaaatgttacattttcttgatgaattaaagaagaaaaagatgagaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaa 338417  T
Q  220 tact 223  Q
    ||||    
T  338418 tact 338421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 9537335 - 9537278
Alignment:
Q  140 atgaattaaagaa--gagaaagatgaaaatgtgagtttgtgaaatgattgacttttgg 195  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||    
T  9537335 atgaattaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgatggacttttgg 9537278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 43407881 - 43407776
Alignment:
Q  24 ttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaaagaa 123  Q
    |||||||||||||||||||||||||||||||   ||||| |||||| || | | |||||||||| |  |||| ||||||| ||||||| | || |||||     
T  43407881 ttaattatgttttatatgaaagttgtgtatgtggatgtgatgtgaactggtttgttttatattattatgcttgatatgttcttgtgatgtagggaaagag 43407782  T
Q  124 atgtta 129  Q
    ||||||    
T  43407781 atgtta 43407776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 26317317 - 26317426
Alignment:
Q  20 attcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaa 119  Q
    |||||||||| ||| |||||||| | |||||||||| |||||| |||  | ||||||||||||| | | |  | ||||||| | |||||||| |||| ||    
T  26317317 attcttaattttgtattatatgatatttgtgtatgaaaatgtgatgtagaatgatatattttatgtgattatgttttatatatctttgtgatgttgggaa 26317416  T
Q  120 agaaatgtta 129  Q
    ||||||||||    
T  26317417 agaaatgtta 26317426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 7e-83; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 40691016 - 40691220
Alignment:
Q  20 attcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaa 119  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  40691016 attcttaattatgttttagatgaaagttgtgtatgataatgtggtgtgaattgatatattttatatcaatgcgctttatatgtttttgtgatgttggaaa 40691115  T
Q  120 agaaatgttaca-nnnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatgcatta 218  Q
    ||||||||||||        |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40691116 agaaatgttacattttttttgatgaattaaagaagaaaaagatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtgcttgatgatgcatta 40691215  T
Q  219 atact 223  Q
    |||||    
T  40691216 atact 40691220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 30909902 - 30910107
Alignment:
Q  20 attcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaa 119  Q
    ||||||||||||||||||||||||||||||||| ||||||||| || || |||||||||||||||||| |  ||||||||||||||| | || |||||||    
T  30909902 attcttaattatgttttatatgaaagttgtgtacgataatgtgatgcgagttgatatattttatattattatgctttatatgttttttttatgttggaaa 30910001  T
Q  120 agaaatgttacannnnnnngatgaattaaag----aagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatgca 215  Q
    || |||||||||       || |||||||||    || |||| |||||||||||| ||||||||||||||||| |||||| |||||| |||||| |||||    
T  30910002 agtaatgttaca--tttttgacgaattaaagaaaaaaaagaacgatgaaaatgtgtgtttgtgaaatgattgaattttggtttgtgtacttgatcatgca 30910099  T
Q  216 ttaatact 223  Q
    ||||||||    
T  30910100 ttaatact 30910107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 38001023 - 38001093
Alignment:
Q  59 tgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaaagaaatgtta 129  Q
    |||| |||||| |||||||||||||  || |  |||||||||||||||||||| |||||||||| ||||||    
T  38001023 tgtgatgtgaaatgatatattttatgctattatgctttatatgtttttgtgatgttggaaaagagatgtta 38001093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 36732259 - 36732053
Alignment:
Q  20 attcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaa 119  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||  ||||||    
T  36732259 attcttaattatgtttgatataaaagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgctggaaa 36732160  T
Q  120 agaaatgttaca---nnnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatgcat 216  Q
    |||||||| |||          |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  36732159 agaaatgtcacatttgttttttgatgaattaaggaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtgcgtgatgatgcat 36732060  T
Q  217 taatact 223  Q
    |||||||    
T  36732059 taatact 36732053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 40447592 - 40447794
Alignment:
Q  20 attcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaa 119  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |  |||||||||| |||||||   |||||||    
T  40447592 attcttaattatgttttatatgaaagtagtgtatgataatgtggtgtggattgatatattttatattattatgctttatatg-ttttgtggcgttggaaa 40447690  T
Q  120 agaaatgttacannnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatgcattaa 219  Q
    || |||||||||       ||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  40447691 agtaatgttacattttcttgatgatttaaagaagaaaaagatgataatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaa 40447790  T
Q  220 tact 223  Q
    ||||    
T  40447791 tact 40447794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 18292809 - 18292605
Alignment:
Q  20 attcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaa 119  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |  ||||||||| |||||||||| |||||||    
T  18292809 attcttaattatgttttatatgaaagttgtgtgtgataatgtagtgtgaattgatatattttatattattatgctttatatatttttgtgatgttggaaa 18292710  T
Q  120 agaaatgttaca--nnnnnnngatgaattaaag--aagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatgca 215  Q
    ||||||||||||          |||||| ||||  |||||||||||||||||||||||||||||||||||||||  || ||||||||| |||||||||||    
T  18292709 agaaatgttacattttttttttatgaataaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgattgacggtt-ggttgtgtgtttgatgatgca 18292611  T
Q  216 ttaata 221  Q
    ||||||    
T  18292610 ttaata 18292605  T

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Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 40729490 - 40729290
Alignment:
Q  20 attcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaa 119  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||| |||||||    
T  40729490 attcttaattatgttttatatggaaattgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgttggaaa 40729391  T
Q  120 agaaatgttacannnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatgcattaa 219  Q
    ||||||| || |        |||||||||| || ||||||||||| |||||| ||||||||||| | ||||||| ||||||||| |||||||||| ||||    
T  40729390 agaaatgctatattttttttatgaattaaataatagaaagatgaacatgtgaatttgtgaaatggtggactttt-ggttgtgtgtttgatgatgcgttaa 40729292  T
Q  220 ta 221  Q
    ||    
T  40729291 ta 40729290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 41340789 - 41340680
Alignment:
Q  20 attcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaa 119  Q
    ||||||| |||||||||||||||||||||||||||   ||||| |||||| || ||| |||||||||| |  |||| ||||||| ||||||| | || ||    
T  41340789 attcttacttatgttttatatgaaagttgtgtatgtggatgtgatgtgaactggtatgttttatattattatgcttgatatgttcttgtgatgtagggaa 41340690  T
Q  120 agaaatgtta 129  Q
    ||| ||||||    
T  41340689 agagatgtta 41340680  T

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Target: scaffold0041 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 33259 - 33190
Alignment:
Q  140 atgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgat 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||    
T  33259 atgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttggttcgtgtacttgat 33190  T

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Target: scaffold0041; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 33349 - 33284
Alignment:
Q  66 tgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaaagaaatgttaca 131  Q
    |||||||||||||||||| ||| |  | |||||||||||||||||| | |||||||||||||||||    
T  33349 tgaattgatatattttatcttattatgttttatatgtttttgtgatgtaggaaaagaaatgttaca 33284  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 7337208 - 7337103
Alignment:
Q  24 ttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaaagaa 123  Q
    |||||||||||||||||||||||||||||||   ||||| |||||| || | | |||||||||| |  |||| ||||||| ||||||| | || |||||     
T  7337208 ttaattatgttttatatgaaagttgtgtatgtggatgtgatgtgaactggtttgttttatattattatgcttgatatgttcttgtgatgtagggaaagag 7337109  T
Q  124 atgtta 129  Q
    ||||||    
T  7337108 atgtta 7337103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 43278365 - 43278256
Alignment:
Q  20 attcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaa 119  Q
    ||||||||||||||||||| |||||||||||||||   ||||| |||||| || | | |||||||||| |  |||| ||||||| ||||||| | || ||    
T  43278365 attcttaattatgttttatgtgaaagttgtgtatgtggatgtgatgtgaactggtttgttttatattattatgcttgatatgttcttgtgatgtagggaa 43278266  T
Q  120 agaaatgtta 129  Q
    ||| ||||||    
T  43278265 agagatgtta 43278256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 444 - 502
Alignment:
Q  139 gatgaattaaagaa--gagaaagatgaaaatgtgagtttgtgaaatgattgacttttgg 195  Q
    ||||||||||||||  ||||||| |||||||||||||||||||||||||  ||||||||    
T  444 gatgaattaaagaaaagagaaagttgaaaatgtgagtttgtgaaatgatgaacttttgg 502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 44436323 - 44436389
Alignment:
Q  154 agaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatgcattaata 221  Q
    ||||||||||||| ||||| |||||||||||||||||||| |  |||||| |||||||||| ||||||    
T  44436323 agaaagatgaaaacgtgagattgtgaaatgattgactttt-gcctgtgtgtttgatgatgcgttaata 44436389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 41958442 - 41958337
Alignment:
Q  24 ttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaaagaa 123  Q
    ||||||||||| || |||| | || || |||| | |||| |||||| | |||||||||||  || |  |||||||||||||||||||| ||||||||||     
T  41958442 ttaattatgttctagatgatatttatgaatgagagtgtgatgtgaaataatatattttatgctattatgctttatatgtttttgtgatgttggaaaagag 41958343  T
Q  124 atgtta 129  Q
    ||||||    
T  41958342 atgtta 41958337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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