View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0225_low_33 (Length: 287)

Name: NF0225_low_33
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0225_low_33
NF0225_low_33
[»] chr5 (1 HSPs)
chr5 (53-259)||(885188-885396)


Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 53 - 259
Target Start/End: Original strand, 885188 - 885396
Alignment:
53 agattgtgcatttgttactaatggtatagttggttggatactatatagatatcaacttcctctatcaaaacacgaatttgatatccatactatctcttga 152  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
885188 agattatgcatttgttacaaatggtatagttggttggatactatatagatatcaacttcctctatcaaaacacgaatttgatatccatactatctcttga 885287  T
153 attgattgtggcatgagtattttattacataagtgaagcattgatattttacag--caagcaaatggttgataatttgtttatttgtccatcatcctctt 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||    
885288 attgattgtggcatgagtattttattacataagtgaagcattgatattttacagcacaagcaactggttgataatttgtttatttgtccatcatcctctt 885387  T
251 gaaaatgag 259  Q
    |||||||||    
885388 gaaaatgag 885396  T

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