View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0225_low_36 (Length: 276)
Name: NF0225_low_36
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_low_36 |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 11445645 - 11445741
Alignment:
| Q |
81 |
agatgaggctaattcagtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaattt |
177 |
Q |
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| T |
11445645 |
agatgaagctaattcagtaagagtcattggttttccatggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaattt |
11445741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 81 - 177
Target Start/End: Complemental strand, 11547445 - 11547349
Alignment:
| Q |
81 |
agatgaggctaattcagtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaattt |
177 |
Q |
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| T |
11547445 |
agatgaagctaattcagtaagagtcattggttttccatggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaattt |
11547349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 81 - 177
Target Start/End: Complemental strand, 11507214 - 11507118
Alignment:
| Q |
81 |
agatgaggctaattcagtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaattt |
177 |
Q |
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| T |
11507214 |
agatgaagctaattcagtaagagtcattggttttccatggttttggattgcatctgctatgcctagttccacggctgatttgagtgccatggaattt |
11507118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 81 - 174
Target Start/End: Complemental strand, 34784026 - 34783933
Alignment:
| Q |
81 |
agatgaggctaattcagtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaa |
174 |
Q |
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| T |
34784026 |
agatgaggctaattcagaaagagtcattggttttccatggttatggattgcatcagctatgcctagttccatggctgatttgagtgccatggaa |
34783933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 81 - 174
Target Start/End: Complemental strand, 34775805 - 34775712
Alignment:
| Q |
81 |
agatgaggctaattcagtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaa |
174 |
Q |
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||||||||||| ||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||| || |||||||| ||||||||| |
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| T |
34775805 |
agatgaggctagttcagaaagagtcattggttttccatggttgtgaattgcatcagctatgcctagttccatggctgatttgagagccatggaa |
34775712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 174
Target Start/End: Original strand, 11468617 - 11468710
Alignment:
| Q |
81 |
agatgaggctaattcagtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaa |
174 |
Q |
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||||||||||||||||| || |||||| || ||||| || |||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
11468617 |
agatgaggctaattcaggaacagtcataggctttccatgtttgtggattgcatctactattcctagttccacagcagatttgagtgccatggaa |
11468710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 174
Target Start/End: Complemental strand, 11522844 - 11522751
Alignment:
| Q |
81 |
agatgaggctaattcagtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaa |
174 |
Q |
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| T |
11522844 |
agatgaggctaattcaggaacagtcataggctttccatgtttgtggattgcatctactattcctagttccacagcagatttgagtgccatggaa |
11522751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 81 - 177
Target Start/End: Complemental strand, 1871 - 1775
Alignment:
| Q |
81 |
agatgaggctaattcagtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaattt |
177 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||| |
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| T |
1871 |
agatgaagctaattcagtaagagtcattggttttccatggttttggattgcatctgctatgcctagttccacggctgatttgagtgccatggaattt |
1775 |
T |
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