View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0225_low_37 (Length: 264)
Name: NF0225_low_37
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_low_37 |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 10 - 255
Target Start/End: Complemental strand, 2675715 - 2675472
Alignment:
| Q |
10 |
taactgtttacaaaaatttctttatctttgtacctcattacataactgtcatagacttatagtatctaaggaaattgagtatccaaaatctgcaaagatt |
109 |
Q |
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| T |
2675715 |
taactgtttacaaaaatttctttatctttgtacctcattacataactgtcatagacttatagtatctaaggaaattgagtatccaaaatctgcaaagatt |
2675616 |
T |
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| Q |
110 |
tggcagtaatagacaaatttttacagaagtatgagacataaatagttcatcaagcatgagcagccatactatatcaacaagctcaaccacaactaggttt |
209 |
Q |
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| T |
2675615 |
tggcag--atagacaaatttttacagcagtatgagacataaatagttcatcaagcatgagaagtcatactatatcaacaagctcaaccacaactaggttt |
2675518 |
T |
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| Q |
210 |
tgctagctatttgtggcattatcctctgcattcctcgtttctgtgc |
255 |
Q |
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| T |
2675517 |
tgctagctatttgtggtattatcttctgcattcctcgtttctgtgc |
2675472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 125 - 255
Target Start/End: Complemental strand, 143011 - 142880
Alignment:
| Q |
125 |
aatttttacagaagtatgagacataaatagttcatcaagcatgagcagcca-tactatatcaacaagctcaaccacaactaggttttgctagctatttgt |
223 |
Q |
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| T |
143011 |
aatttttacagtagtatgaaacatgaaatgttcatgaagcatgagcagccagtacactatcaacaagctcaatcaccactgggatttgctggctatttgt |
142912 |
T |
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| Q |
224 |
ggcattatcctctgcattcctcgtttctgtgc |
255 |
Q |
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| T |
142911 |
gacattctcttctgcatttcttgtttctgtgc |
142880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 241
Target Start/End: Complemental strand, 150978 - 150826
Alignment:
| Q |
93 |
caaaatctgcaaagatttggcagtaatagacaaatttttacagaagtatgagacataa---atagttcatcaagcatgagcagcca-tactatatcaaca |
188 |
Q |
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| T |
150978 |
caaaatcttaaaatatttggcagtaatagattaatttttacagtagtttgaaacattattaatagttcatgaagaatgagtagcaagtacactatcaaca |
150879 |
T |
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| Q |
189 |
agctcaaccacaactaggttttgctagctatttgtggcattatcctctgcatt |
241 |
Q |
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| T |
150878 |
agatcaaccaccacaaggttttgctggctattagtgacattctcctctgcatt |
150826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 24988956 - 24988872
Alignment:
| Q |
154 |
gttcatcaagcatgagcagcca-tactatatcaacaagctcaaccacaactaggttttgctagctatttgtggcattatcctctg |
237 |
Q |
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| T |
24988956 |
gttcatgaagcatgagcagccagtacattatcaacaaactcaaccactactagaatttgctggctattagtgacattctcctctg |
24988872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 237
Target Start/End: Complemental strand, 24912284 - 24912191
Alignment:
| Q |
145 |
acataaatagttcatcaagcatgagcagcca-tactatatcaacaagctcaaccacaactaggttttgctagctatttgtggcattatcctctg |
237 |
Q |
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| T |
24912284 |
acattaattgttcatgaagcatgagcagccagtacattatcgacaaactcaaccactactagaatttgctggctattagtgacattctcctctg |
24912191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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