View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0225_low_38 (Length: 262)

Name: NF0225_low_38
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0225_low_38
NF0225_low_38
[»] chr3 (1 HSPs)
chr3 (90-256)||(1182024-1182193)
[»] chr7 (5 HSPs)
chr7 (115-256)||(8035221-8035366)
chr7 (115-256)||(38111126-38111271)
chr7 (115-256)||(45034130-45034275)
chr7 (115-256)||(46045417-46045562)
chr7 (116-210)||(19303982-19304080)
[»] chr5 (2 HSPs)
chr5 (115-256)||(32385998-32386143)
chr5 (115-256)||(14024445-14024590)
[»] chr8 (3 HSPs)
chr8 (115-256)||(41999794-41999939)
chr8 (115-256)||(45092951-45093096)
chr8 (115-256)||(9215733-9215878)
[»] chr4 (3 HSPs)
chr4 (115-256)||(28945820-28945965)
chr4 (115-256)||(1368944-1369089)
chr4 (115-223)||(36859260-36859372)
[»] chr2 (3 HSPs)
chr2 (115-256)||(11996187-11996332)
chr2 (116-256)||(24126868-24127012)
chr2 (115-256)||(42865427-42865572)
[»] chr1 (1 HSPs)
chr1 (115-256)||(6293526-6293671)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 90 - 256
Target Start/End: Complemental strand, 1182193 - 1182024
Alignment:
Q  90 gtatatagtttccttttgatgaggacttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaataga 186  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    ||||||||||| |||||||||||||||||||||||    
T  1182193 gtatatagtttccttttgatgaggacttctatgtatctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcatatttcaaaataga 1182094  T
Q  187 tttgtttcaccaattccacaaatactagcatgttgtcatgaaagttgtatgccaagtatcagtattatct 256  Q
    |||||||||||||||||| ||||||||||||||||||||||||||  ||| | ||||| ||| |||||||    
T  1182093 tttgtttcaccaattccataaatactagcatgttgtcatgaaagtcatatactaagtagcaggattatct 1182024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 115 - 256
Target Start/End: Complemental strand, 8035366 - 8035221
Alignment:
Q  115 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 210  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||    
T  8035366 cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 8035267  T
Q  211 ctagcatgttgtcatgaaagttgtatgccaagtatcagtattatct 256  Q
    | | ||||||||||||||||| || ||||||||| ||| |||||||    
T  8035266 ccaacatgttgtcatgaaagtagtctgccaagtagcagaattatct 8035221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 256
Target Start/End: Original strand, 38111126 - 38111271
Alignment:
Q  115 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 210  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||    
T  38111126 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 38111225  T
Q  211 ctagcatgttgtcatgaaagttgtatgccaagtatcagtattatct 256  Q
    | | ||||||||||||||||| || ||||||||| ||| |||||||    
T  38111226 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 38111271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 256
Target Start/End: Original strand, 45034130 - 45034275
Alignment:
Q  115 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 210  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||| |||||||| |||||||||| |||| ||||||| |||||||||||||||    
T  45034130 cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagaattgtttcgccaattccacaaata 45034229  T
Q  211 ctagcatgttgtcatgaaagttgtatgccaagtatcagtattatct 256  Q
    | | |||||| |||||||||| || ||||||||| ||| |||||||    
T  45034230 ccaacatgttatcatgaaagtagtctgccaagtagcaggattatct 45034275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 256
Target Start/End: Complemental strand, 46045562 - 46045417
Alignment:
Q  115 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 210  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||    
T  46045562 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 46045463  T
Q  211 ctagcatgttgtcatgaaagttgtatgccaagtatcagtattatct 256  Q
    | | ||||||||||||||||| || ||||||||| ||| |||||||    
T  46045462 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 46045417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 19303982 - 19304080
Alignment:
Q  116 ttctatctctctagtaaacttttgaattaccag---tgaattgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 210  Q
    |||||| ||||  ||||||||||||||||| ||   || |||| | |||| |||||||| |||||||||| |||||||||| | |||||||||||||||    
T  19303982 ttctatgtctcaggtaaacttttgaattactagcgttggattgttcggtctttgaaatcctatttcaaaaatagatttgttccgccaattccacaaata 19304080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 115 - 256
Target Start/End: Complemental strand, 32386143 - 32385998
Alignment:
Q  115 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 210  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||    
T  32386143 cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 32386044  T
Q  211 ctagcatgttgtcatgaaagttgtatgccaagtatcagtattatct 256  Q
    | | ||||||||||||||||| || ||||||||| ||| |||||||    
T  32386043 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 32385998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 256
Target Start/End: Complemental strand, 14024590 - 14024445
Alignment:
Q  115 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 210  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||    
T  14024590 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 14024491  T
Q  211 ctagcatgttgtcatgaaagttgtatgccaagtatcagtattatct 256  Q
    | | ||||||||||||||||| || ||||||||| ||| |||||||    
T  14024490 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 14024445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 115 - 256
Target Start/End: Complemental strand, 41999939 - 41999794
Alignment:
Q  115 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 210  Q
    |||||||||||||||||||||||||||||| |||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||    
T  41999939 cttctatctctctagtaaacttttgaattaacagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 41999840  T
Q  211 ctagcatgttgtcatgaaagttgtatgccaagtatcagtattatct 256  Q
    | | ||||||||||||||||| || ||||||||| ||| |||||||    
T  41999839 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 41999794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 115 - 256
Target Start/End: Complemental strand, 45093096 - 45092951
Alignment:
Q  115 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 210  Q
    ||||||||||||||||||||||||||||||| ||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||    
T  45093096 cttctatctctctagtaaacttttgaattacgagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 45092997  T
Q  211 ctagcatgttgtcatgaaagttgtatgccaagtatcagtattatct 256  Q
    | | ||||||||| ||||| | || ||||||||| ||| |||||||    
T  45092996 ccaacatgttgtcgtgaaattagtctgccaagtagcaggattatct 45092951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 115 - 256
Target Start/End: Complemental strand, 9215878 - 9215733
Alignment:
Q  115 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 210  Q
    |||||||||||||||| ||||||||||| |||||||    ||||||| ||| |||||||| |||||||||| || ||||||||| |||||||||||||||    
T  9215878 cttctatctctctagtcaacttttgaataaccagtgttggattgcttagtctttgaaatcctatttcaaaaatatatttgtttcgccaattccacaaata 9215779  T
Q  211 ctagcatgttgtcatgaaagttgtatgccaagtatcagtattatct 256  Q
    | |||||| |||||||||||| || | ||||||| ||| |||||||    
T  9215778 ccagcatgatgtcatgaaagtagtctcccaagtagcaggattatct 9215733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 115 - 256
Target Start/End: Original strand, 28945820 - 28945965
Alignment:
Q  115 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 210  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||    
T  28945820 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 28945919  T
Q  211 ctagcatgttgtcatgaaagttgtatgccaagtatcagtattatct 256  Q
    | | ||||||||||||||||| || ||||||||| ||| |||||||    
T  28945920 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 28945965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 256
Target Start/End: Complemental strand, 1369089 - 1368944
Alignment:
Q  115 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 210  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||    
T  1369089 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 1368990  T
Q  211 ctagcatgttgtcatgaaagttgtatgccaagtatcagtattatct 256  Q
    | | ||||||||||||||||| || ||||||||| ||| |||||||    
T  1368989 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 1368944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 36859260 - 36859372
Alignment:
Q  115 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttc-aaaatagatttgtttcaccaattccacaaata 210  Q
    ||||||| ||||||||||||||||||||||| |||||   |||||| |||| |||||||| |||||| |||||||||||||||  |||||||||||||||    
T  36859260 cttctatttctctagtaaacttttgaattactagtgatggattgctcggtctttgaaatcctatttcaaaaatagatttgtttagccaattccacaaata 36859359  T
Q  211 ctagcatgttgtc 223  Q
      | |||||||||    
T  36859360 tcaacatgttgtc 36859372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 115 - 256
Target Start/End: Original strand, 11996187 - 11996332
Alignment:
Q  115 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 210  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||| ||| |||| |||||||||| |||||||||||| |||||||||||||||    
T  11996187 cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttggaatcctatttcaaaaatagatttgtttcgccaattccacaaata 11996286  T
Q  211 ctagcatgttgtcatgaaagttgtatgccaagtatcagtattatct 256  Q
    | | ||||||||||||||||| || ||||||||| ||| |||||||    
T  11996287 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 11996332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 116 - 256
Target Start/End: Original strand, 24126868 - 24127012
Alignment:
Q  116 ttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaatac 211  Q
    |||||||||||||||||||||||||||||||||||    ||||| ||||| ||||||||||||||||||| |||||||||||| ||||||||| ||||||    
T  24126868 ttctatctctctagtaaacttttgaattaccagtgttggattgcctggtctttgaaatcatatttcaaaaatagatttgtttcgccaattccataaatac 24126967  T
Q  212 tagcatgttgtcatgaaagttgtatgccaagtatcagtattatct 256  Q
     | ||||||||||||||||| || ||||||||| ||| |||||||    
T  24126968 caacatgttgtcatgaaagtagtctgccaagtagcaggattatct 24127012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 256
Target Start/End: Complemental strand, 42865572 - 42865427
Alignment:
Q  115 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 210  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||    
T  42865572 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 42865473  T
Q  211 ctagcatgttgtcatgaaagttgtatgccaagtatcagtattatct 256  Q
    | | ||||||||||||||||| || ||||||||| ||| |||||||    
T  42865472 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 42865427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 115 - 256
Target Start/End: Complemental strand, 6293671 - 6293526
Alignment:
Q  115 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 210  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||| || |||||    
T  6293671 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattacataaata 6293572  T
Q  211 ctagcatgttgtcatgaaagttgtatgccaagtatcagtattatct 256  Q
    | | ||||||||||||||||| || ||||||||| ||| |||||||    
T  6293571 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 6293526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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