View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0225_low_40 (Length: 258)
Name: NF0225_low_40
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_low_40 |
 | |
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| [»] chr7 (6 HSPs) |
| |
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| [»] chr8 (3 HSPs) |
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| [»] chr5 (5 HSPs) |
| |
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| [»] scaffold0094 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 9987410 - 9987529
Alignment:
| Q |
139 |
atttctcaagcttttcaaggtattaccattcactctttctattataatatgtgttcttttcaacaaatcaaccatgttcccataaacttgtgcctgattc |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9987410 |
atttctcaagcttttcaaggtattaccattcactctctctattataatatatgttcttttcaacaaatcaaccatgttcccataaacttgtgcctgattc |
9987509 |
T |
|
| Q |
239 |
tttgttcaatttcagggttt |
258 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
9987510 |
tttgttcaatttcagggttt |
9987529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 251
Target Start/End: Original strand, 39286621 - 39286728
Alignment:
| Q |
144 |
tcaagcttttcaaggtattaccattcactctttctattataatatgtgttcttttcaacaaatcaaccatgttcccataaacttgtgcctgattctttgt |
243 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||| || || |
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|
| T |
39286621 |
tcaagcttttcaaggtattactattcactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacttgatttttggt |
39286720 |
T |
|
| Q |
244 |
tcaatttc |
251 |
Q |
| |
|
|||||||| |
|
|
| T |
39286721 |
tcaatttc |
39286728 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 144 - 251
Target Start/End: Original strand, 13937590 - 13937697
Alignment:
| Q |
144 |
tcaagcttttcaaggtattaccattcactctttctattataatatgtgttcttttcaacaaatcaaccatgttcccataaacttgtgcctgattctttgt |
243 |
Q |
| |
|
||||||||||||||||||||| || |||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||| || || |
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|
| T |
13937590 |
tcaagcttttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacttgatttttggt |
13937689 |
T |
|
| Q |
244 |
tcaatttc |
251 |
Q |
| |
|
|||||||| |
|
|
| T |
13937690 |
tcaatttc |
13937697 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 139 - 240
Target Start/End: Complemental strand, 17218495 - 17218393
Alignment:
| Q |
139 |
atttctcaagcttttcaaggtattaccattcactctttctatta-taatatgtgttcttttcaacaaatcaaccatgttcccataaacttgtgcctgatt |
237 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||| | ||||| ||||||||||||||||||||||||||| | ||||| |
|
|
| T |
17218495 |
atttctcaagctttttaaggtattaccattcactctctctattaataatatgtgttatcttcaaaaaatcaaccatgttcccataaacttgtacttgatt |
17218396 |
T |
|
| Q |
238 |
ctt |
240 |
Q |
| |
|
||| |
|
|
| T |
17218395 |
ctt |
17218393 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 9987313 - 9987390
Alignment:
| Q |
26 |
atcaattccttccaaaaacttgtaccatttgtcaagctcttctaggttagcttctcttctcttcagatttgaggttct |
103 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9987313 |
atcaattccttccaagaacttgtaccacttctcaagctcttcaaggttagcttctcttctcttcagatttgaggttct |
9987390 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 17218568 - 17218532
Alignment:
| Q |
57 |
tcaagctcttctaggttagcttctcttctcttcagat |
93 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
17218568 |
tcaagctcttcaaggtttgcttctcttctcttcagat |
17218532 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 14330795 - 14330914
Alignment:
| Q |
139 |
atttctcaagcttttcaaggtattaccattcactctttctattataatatgtgttcttttcaacaaatcaaccatgttcccataaacttgtgcctgattc |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14330795 |
atttctcaagcttttcaaggtattaccattcactctctatattataatatgtgttcttgtcaacaaatcaaccatgttcccataaacttgtgactgattc |
14330894 |
T |
|
| Q |
239 |
tttgttcaatttcagggttt |
258 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
14330895 |
tttgttcaatttcagggttt |
14330914 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 14330699 - 14330776
Alignment:
| Q |
26 |
atcaattccttccaaaaacttgtaccatttgtcaagctcttctaggttagcttctcttctcttcagatttgaggttct |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14330699 |
atcaattccttccaaaaacttgtaccatttctcaagctcttcaaggttagcttctcctctcttcagatttgaggttct |
14330776 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 24251544 - 24251604
Alignment:
| Q |
197 |
ttcaacaaatcaaccatgttcccataaacttgtgcctgattctttgttcaatttcagggttt |
258 |
Q |
| |
|
||||||||||||| |||||| |||||||||||| |||| ||| ||||||||||| ||||||| |
|
|
| T |
24251544 |
ttcaacaaatcaagcatgttaccataaacttgtacctggttc-ttgttcaattttagggttt |
24251604 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 21724267 - 21724386
Alignment:
| Q |
139 |
atttctcaagcttttcaaggtattaccattcactctttctattataatatgtgttcttttcaacaaatcaaccatgttcccataaacttgtgcctgattc |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21724267 |
atttctcaagcttttcaaggtattaccattcactctctatattataatatgtgttcttgtcaacaaatcaaccatgtacccataaacttgtgcctgattc |
21724366 |
T |
|
| Q |
239 |
tttgttcaatttcagggttt |
258 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
21724367 |
tttgttcaatttcagggttt |
21724386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 21804003 - 21804122
Alignment:
| Q |
139 |
atttctcaagcttttcaaggtattaccattcactctttctattataatatgtgttcttttcaacaaatcaaccatgttcccataaacttgtgcctgattc |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21804003 |
atttctcaagcttttcaaggtattaccattcactctctatattataatatgtgttcttgtcaacaaatcaaccatgtacccataaacttgtgcctgattc |
21804102 |
T |
|
| Q |
239 |
tttgttcaatttcagggttt |
258 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
21804103 |
tttgttcaatttcagggttt |
21804122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 21724170 - 21724247
Alignment:
| Q |
26 |
atcaattccttccaaaaacttgtaccatttgtcaagctcttctaggttagcttctcttctcttcagatttgaggttct |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21724170 |
atcaattccttccaaaaacttgtaccatttctcaagctcttcaaggttagcttctcttctcttcagatttgaggttct |
21724247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 21803907 - 21803984
Alignment:
| Q |
26 |
atcaattccttccaaaaacttgtaccatttgtcaagctcttctaggttagcttctcttctcttcagatttgaggttct |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21803907 |
atcaattccttccaaaaacttgtaccatttctcaagctcttcaaggttagcttctcttctcttcagatttgaggttct |
21803984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 19589565 - 19589488
Alignment:
| Q |
26 |
atcaattccttccaaaaacttgtaccatttgtcaagctcttctaggttagcttctcttctcttcagatttgaggttct |
103 |
Q |
| |
|
||||||| |||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19589565 |
atcaatttcttccaaaaatttgtaccatttctcaagctcttcaaggttagcttctcttctcttcagatttgaggttct |
19589488 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 6794 - 6913
Alignment:
| Q |
139 |
atttctcaagcttttcaaggtattaccattcactctttctattataatatgtgttcttttcaacaaatcaaccatgttcccataaacttgtgcctgattc |
238 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| | |||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6794 |
atttctcaagctatttaaggtattaccattcactctctatattataatatgtgttctcttcaataaatcaaccatgttcccataaacttgtacctgattc |
6893 |
T |
|
| Q |
239 |
tttgttcaatttcagggttt |
258 |
Q |
| |
|
|| ||||||||| ||||||| |
|
|
| T |
6894 |
ttggttcaattttagggttt |
6913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 6729 - 6765
Alignment:
| Q |
57 |
tcaagctcttctaggttagcttctcttctcttcagat |
93 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
6729 |
tcaagctcttcaaggtttgcttctcttctcttcagat |
6765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 15259871 - 15259764
Alignment:
| Q |
144 |
tcaagcttttcaaggtattaccattcactctttctattataatatgtgttcttttcaacaaatcaaccatgttcccataaacttgtgcctgattctttgt |
243 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||| || || |
|
|
| T |
15259871 |
tcaagcttttcaaggtattactattcactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacttgatttttggt |
15259772 |
T |
|
| Q |
244 |
tcaatttc |
251 |
Q |
| |
|
|||||||| |
|
|
| T |
15259771 |
tcaatttc |
15259764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 139 - 250
Target Start/End: Original strand, 33590829 - 33590940
Alignment:
| Q |
139 |
atttctcaagcttttcaaggtattaccattcactctttctattataatatgtgttcttttcaacaaatcaaccatgttcccataaacttgtgcctgattc |
238 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||| ||||||| ||||||| |||| |||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
33590829 |
atttctcaagctttttaaggtatcaccattcactctctctattacaatatgtattctcttcaacaaatcaaccatgtttccataaacttgtacctgattc |
33590928 |
T |
|
| Q |
239 |
tttgttcaattt |
250 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
33590929 |
ttagttcaattt |
33590940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 144 - 251
Target Start/End: Original strand, 31140321 - 31140428
Alignment:
| Q |
144 |
tcaagcttttcaaggtattaccattcactctttctattataatatgtgttcttttcaacaaatcaaccatgttcccataaacttgtgcctgattctttgt |
243 |
Q |
| |
|
||||||||||||||||||||| | |||||| ||||||||||| ||||||| |||||||||||||||||||||||||||| |||| ||||||| || || |
|
|
| T |
31140321 |
tcaagcttttcaaggtattactacccactctctctattataatgggtgttctcttcaacaaatcaaccatgttcccataaatttgtacctgatttttggt |
31140420 |
T |
|
| Q |
244 |
tcaatttc |
251 |
Q |
| |
|
|||||||| |
|
|
| T |
31140421 |
tcaatttc |
31140428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 23246709 - 23246769
Alignment:
| Q |
197 |
ttcaacaaatcaaccatgttcccataaacttgtgcctgattctttgttcaatttcagggttt |
258 |
Q |
| |
|
||||||||||||| |||||| |||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
23246709 |
ttcaacaaatcaagcatgttaccataaacttgtacctgattc-ttgttcaattttagggttt |
23246769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 18748753 - 18748691
Alignment:
| Q |
195 |
ttttcaacaaatcaaccatgttcccataaacttgtgcctgattctttgttcaatttcagggttt |
258 |
Q |
| |
|
||||||||||||| | |||||| |||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
18748753 |
ttttcaacaaatctagcatgttaccataaacttgtacctgattc-ttgttcaattttagggttt |
18748691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 30231048 - 30231109
Alignment:
| Q |
197 |
ttcaacaaatcaaccatgttcccataaacttgtgcctgattctttgttcaatttcagggttt |
258 |
Q |
| |
|
||||||||||||| |||||| |||||||||||| | |||| ||| ||||||||| ||||||| |
|
|
| T |
30231048 |
ttcaacaaatcaagcatgttaccataaacttgtacatgatgcttggttcaattttagggttt |
30231109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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