View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0225_low_42 (Length: 257)

Name: NF0225_low_42
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0225_low_42
NF0225_low_42
[»] chr5 (8 HSPs)
chr5 (29-257)||(25477929-25478157)
chr5 (41-203)||(25470065-25470226)
chr5 (40-182)||(32752395-32752538)
chr5 (81-143)||(32740837-32740899)
chr5 (88-135)||(32749918-32749965)
chr5 (95-141)||(32655380-32655426)
chr5 (32-61)||(32655310-32655339)
chr5 (81-141)||(32748420-32748480)
[»] chr7 (4 HSPs)
chr7 (81-205)||(37577819-37577943)
chr7 (127-197)||(32895282-32895352)
chr7 (35-135)||(45832484-45832582)
chr7 (81-110)||(32895342-32895371)
[»] chr2 (2 HSPs)
chr2 (32-146)||(16753107-16753219)
chr2 (33-114)||(16757641-16757718)
[»] chr1 (1 HSPs)
chr1 (32-157)||(17584143-17584266)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 29 - 257
Target Start/End: Complemental strand, 25478157 - 25477929
Alignment:
Q  29 aaattcaattgctgaaaatcatccccagtaaaaataatcattatacaggtcacaagacaaaacaaaaagaacaaaagtcaaatccatgataagaaatgca 128  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25478157 aaattcaattgttgaaaatcatccccagtaaaaataatcagtatacaagtcacaagacaaaacaaaaagaacaaaagtcaaatccatgataagaaatgca 25478058  T
Q  129 aaagtcatagactatatgttaccaataatatatgatttttctacttatatggtgattgtcttcatgatacgggtcacagatagcggaggatgataggtgc 228  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25478057 aaagtcatagactatatgttatcaataatatatgatttttctacttatatggtgattgtcttaatgatacgggtcacagatagcggaggatgataggtgc 25477958  T
Q  229 ggttgtcgtctagtccccaatgatgcgca 257  Q
    |||||||||||||||||||||| ||||||    
T  25477957 ggttgtcgtctagtccccaatggtgcgca 25477929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 203
Target Start/End: Complemental strand, 25470226 - 25470065
Alignment:
Q  41 tgaaaatcatccccagtaaaaat-aatcattatacaggtcacaagacaaaacaaaaagaacaaaagtcaaatccatgataagaaatgcaaaagtcataga 139  Q
    ||||||||||||||| ||||||| ||||||||||||| | |  |||  ||| ||||| || ||||||||||| | | |||||||| |||||||||||||     
T  25470226 tgaaaatcatccccaataaaaattaatcattatacagctta--agaacaaaaaaaaaaaaaaaaagtcaaattcttaataagaaaagcaaaagtcatagg 25470129  T
Q  140 ctatatgttaccaataatatatgatttttctacttatatggtgattgtcttcatgatacgggtc 203  Q
    |||||||||| ||||||||||| | ||||||||||||| |||||||||||||||||||| ||||    
T  25470128 ctatatgttatcaataatatattaattttctacttatagggtgattgtcttcatgatacaggtc 25470065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 182
Target Start/End: Complemental strand, 32752538 - 32752395
Alignment:
Q  40 ctgaaaatcatccccagtaaaaataatcattatacaggtcacaagacaaaacaaaaagaacaaaagtcaaatccatgataagaaatgcaaaagtcataga 139  Q
    |||||||  ||||| ||||||||  |||||||||||   | | |||||||||| |||||||||||||||||||| |  || ||||||||||||||| | |    
T  32752538 ctgaaaaatatcccgagtaaaaaagatcattatacatagctccagacaaaacataaagaacaaaagtcaaatccttattacgaaatgcaaaagtcaaaca 32752439  T
Q  140 ct-atatgttaccaataatatatgatttttctacttatatggtg 182  Q
    ||  || |||| ||||||||| | |||| |||||||||| ||||    
T  32752438 ctcttaagttatcaataatattttatttctctacttataaggtg 32752395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 32740899 - 32740837
Alignment:
Q  81 caagacaaaacaaaaagaacaaaagtcaaatccatgataagaaatgcaaaagtcatagactat 143  Q
    ||||||||||||||||| ||||| ||||||||  | ||||||||||||||||| | |||||||    
T  32740899 caagacaaaacaaaaaggacaaaggtcaaatcattaataagaaatgcaaaagtgaaagactat 32740837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 135
Target Start/End: Complemental strand, 32749965 - 32749918
Alignment:
Q  88 aaacaaaaagaacaaaagtcaaatccatgataagaaatgcaaaagtca 135  Q
    ||||| |||||||||||||||||||| |  ||||||||||||||||||    
T  32749965 aaacataaagaacaaaagtcaaatccttattaagaaatgcaaaagtca 32749918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 32655380 - 32655426
Alignment:
Q  95 aagaacaaaagtcaaatccatgataagaaatgcaaaagtcatagact 141  Q
    ||||||||||||||||||| | |||||||||| |||||||| |||||    
T  32655380 aagaacaaaagtcaaatccttaataagaaatgaaaaagtcaaagact 32655426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 32655310 - 32655339
Alignment:
Q  32 ttcaattgctgaaaatcatccccagtaaaa 61  Q
    ||||||||||||||||||||||||||||||    
T  32655310 ttcaattgctgaaaatcatccccagtaaaa 32655339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 32748480 - 32748420
Alignment:
Q  81 caagacaaaacaaaaagaacaaaagtcaaatccatgataagaaatgcaaaagtcatagact 141  Q
    |||| |||||||  ||||||||||||||||| | |  |||||||||||||||||| |||||    
T  32748480 caaggcaaaacacgaagaacaaaagtcaaattcttattaagaaatgcaaaagtcaaagact 32748420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 81 - 205
Target Start/End: Complemental strand, 37577943 - 37577819
Alignment:
Q  81 caagacaaaacaaaaagaacaaaagtcaaatccatgataagaaatgcaaaagtcatagactatatgttaccaataatatatgatttttctacttatatgg 180  Q
    ||||| ||||||||||||||||||||||||| | | ||||||||||||||||||| ||||   |||||| ||||||| ||||| || || ||||||||||    
T  37577943 caagataaaacaaaaagaacaaaagtcaaattcttaataagaaatgcaaaagtcaaagacccaatgttatcaataatgtatgacttctcaacttatatgg 37577844  T
Q  181 tgattgtcttcatgatacgggtcac 205  Q
    ||||||||||||||| | |||||||    
T  37577843 tgattgtcttcatgacaagggtcac 37577819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 32895352 - 32895282
Alignment:
Q  127 caaaagtcatagactatatgttaccaataatatatgatttttctacttatatggtgattgtcttcatgata 197  Q
    ||||||||| ||||| |||| || ||||||| ||||| ||||||||||||| | |||||||||||||||||    
T  32895352 caaaagtcaaagactctatgctatcaataatgtatgacttttctacttataggctgattgtcttcatgata 32895282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 135
Target Start/End: Complemental strand, 45832582 - 45832484
Alignment:
Q  35 aattgctgaaaatcatccccagtaaaaataatcattatacaggtcacaagacaaaacaaaaagaacaaaagtcaaatccatgataagaaatgcaaaagtc 134  Q
    |||||||||||| |||||| ||||||||  || ||||||||| ||   | |||||||| ||||||||||| |||||||| |  ||||||| |||||||||    
T  45832582 aattgctgaaaaccatcccaagtaaaaaatattattatacagctcc--atacaaaacataaagaacaaaaatcaaatccttattaagaaacgcaaaagtc 45832485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 110
Target Start/End: Complemental strand, 32895371 - 32895342
Alignment:
Q  81 caagacaaaacaaaaagaacaaaagtcaaa 110  Q
    ||||||||||||||||||||||||||||||    
T  32895371 caagacaaaacaaaaagaacaaaagtcaaa 32895342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 146
Target Start/End: Complemental strand, 16753219 - 16753107
Alignment:
Q  32 ttcaattgctgaaaatcatccccagtaaaaataatcattatacaggtcacaagacaaaacaaaaagaacaaaagtcaaatccatgataagaaatgcaaaa 131  Q
    |||||||||||||||||||||| |||| ||| ||| || ||||||  | |||||||||||||||||||||||||| ||| |  | |||||||||||||||    
T  16753219 ttcaattgctgaaaatcatccctagtagaaacaattatcatacag--cccaagacaaaacaaaaagaacaaaagtaaaaccattaataagaaatgcaaaa 16753122  T
Q  132 gtcatagactatatg 146  Q
    |||| ||||| ||||    
T  16753121 gtcagagactttatg 16753107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 16757718 - 16757641
Alignment:
Q  33 tcaattgctgaaaatcatccccagtaaaaataatcattatacaggtcacaagacaaaacaaaaagaacaaaagtcaaatcca 114  Q
    |||||||||||||||||| ||||||||||| |||||||||||||  | |||||||||  ||||| |||||||||||||||||    
T  16757718 tcaattgctgaaaatcatgcccagtaaaaacaatcattatacag--ctcaagacaaa--aaaaacaacaaaagtcaaatcca 16757641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 157
Target Start/End: Complemental strand, 17584266 - 17584143
Alignment:
Q  32 ttcaattgctgaaaatcatccccagtaaaaataatcattatacaggtcacaagacaaaacaaaaagaacaaaagtcaaatccatgataagaaatgcaaaa 131  Q
    |||||||||||||||||||||||||||||||| || |||||||||  | |||||||| ||||||||||| | |||||| | | | |||||||| ||||||    
T  17584266 ttcaattgctgaaaatcatccccagtaaaaat-ataattatacag--ctcaagacaagacaaaaagaacgacagtcaatttcttaataagaaaagcaaaa 17584170  T
Q  132 gtcatagact-atatgttaccaataat 157  Q
    |||| |||||  ||||||| |||||||    
T  17584169 gtcaaagactcttatgttatcaataat 17584143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 15769 times since January 2019
Visitors: 3757