View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0225_low_48 (Length: 251)
Name: NF0225_low_48
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 19031110 - 19030888
Alignment:
| Q |
1 |
tgccattattttagataaagatcatgcatatgcaatgatacttgttaaaggggtaggctttggttagcatgcaatgacaccgattatttttatactataa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
19031110 |
tgccattattttagataaagatcatgcatatgcaatgatacttgttaaaggggtaggctttggttagcatgcaatgacaccgattatttttatactaaaa |
19031011 |
T |
|
| Q |
101 |
-taattcttatccctttaaagctttggtagaaataaatgagtagtgcacaggggttgttaaactctgcagacataaatagttaagtatgctagttgtaat |
199 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19031010 |
ataattcttatccctttaaaactttggtagaaataaatgagtagtgcacaggggttgttaaactctgcagacataaatacttaagtatgctagttgtaat |
19030911 |
T |
|
| Q |
200 |
tctcaacataaaatagttttcat |
222 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
19030910 |
tctcaacataaaatagttttcat |
19030888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 87 - 212
Target Start/End: Complemental strand, 41642802 - 41642682
Alignment:
| Q |
87 |
tttttatactataataattcttatccctttaaagctttggtagaaataaatgagtagtgcacaggggttgttaaactctgcagacataaatagttaagta |
186 |
Q |
| |
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|||| ||||||||||||| |||||||||||||||| |||||||||||| | | | |||| |||| ||||||||| |||||||||||||||||||| |
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| T |
41642802 |
ttttgatactataataatccttatccctttaaagccttggtagaaatagacg-----tacacatgggtggttaaactcgccagacataaatagttaagta |
41642708 |
T |
|
| Q |
187 |
tgctagttgtaattctcaacataaaa |
212 |
Q |
| |
|
|| ||| |||||| |||||||||||| |
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|
| T |
41642707 |
tgttagctgtaatcctcaacataaaa |
41642682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 41643571 - 41643526
Alignment:
| Q |
5 |
attattttagataaagatcatgcatatgcaatgatacttgttaaag |
50 |
Q |
| |
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||||||||||||||||||||| | |||||||||| |||||| |||| |
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| T |
41643571 |
attattttagataaagatcatacgtatgcaatgacacttgtcaaag |
41643526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 31169182 - 31169239
Alignment:
| Q |
87 |
tttttatactataataattcttatccctttaaagctttggtagaaataaatgagtagt |
144 |
Q |
| |
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|||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
31169182 |
ttttgatactataataatccttattcctttaaagctttggtagaaataaatgagtagt |
31169239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 31169051 - 31169100
Alignment:
| Q |
1 |
tgccattattttagataaagatcatgcatatgcaatgatacttgttaaag |
50 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||| |||||| |||| |
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| T |
31169051 |
tgccattattttagataaagatcatacgtatgcaatgacacttgtcaaag |
31169100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 26875601 - 26875551
Alignment:
| Q |
160 |
aactctgcagacataaatagttaagtatgctagttgtaattctcaacataa |
210 |
Q |
| |
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|||| ||||||||||||||| |||| ||||||| |||||| |||||||||| |
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| T |
26875601 |
aactatgcagacataaatagctaaggatgctagctgtaatcctcaacataa |
26875551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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