View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0225_low_51 (Length: 238)

Name: NF0225_low_51
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0225_low_51
NF0225_low_51
[»] chr5 (1 HSPs)
chr5 (1-223)||(3004272-3004512)
[»] chr4 (1 HSPs)
chr4 (33-223)||(54654319-54654527)
[»] chr6 (2 HSPs)
chr6 (47-120)||(6781261-6781336)
chr6 (37-95)||(6666936-6666997)
[»] chr7 (4 HSPs)
chr7 (186-223)||(24761546-24761583)
chr7 (186-223)||(24761177-24761214)
chr7 (120-159)||(24761210-24761249)
chr7 (120-159)||(24761579-24761618)
[»] chr3 (4 HSPs)
chr3 (186-223)||(52128981-52129018)
chr3 (186-223)||(52128612-52128649)
chr3 (120-159)||(52128645-52128684)
chr3 (120-159)||(52129014-52129053)


Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 3004512 - 3004272
Alignment:
Q  1 tcagacttctaatatgtgtagttatttgataccaattcaatcaaggaa-catcatcatttacttgatcggcatctgtcc--tcctggttgaattcaatcc 97  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  3004512 tcagacttctaatatgtttagttatttgataacaattcaatcaaggaaacatcatcatttacttgatcagcatctgtcccgtcctggttgaattcaatcc 3004413  T
Q  98 catcttgtttgtgctctatatcaccactaaacac---------------aaagaacgccaactgaaaaacacaaatgcagtcaccacgacacatacttaa 182  Q
    ||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3004412 catcttgtttgtgctctatatcaccactaaacacttgaccactaaacacaaagaacgccaactgaaaaacacaaatgcagtcaccacgacacatacttaa 3004313  T
Q  183 tcaaaatgggattggaaacaaacataattagcaaataaact 223  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3004312 tcaaaatgggattggaaacaaacataattagcaaataaact 3004272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 33 - 223
Target Start/End: Complemental strand, 54654527 - 54654319
Alignment:
Q  33 caattcaatcaaggaa-catcatcatttacttgatcggcatctgtcc--tcctggttgaattcaatcccatcttgtttgtgctctatatcaccactaaac 129  Q
    |||||||||||||||| ||||||||||  ||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54654527 caattcaatcaaggaaacatcatcattgtcttgatcagcatctgtcccctcctggttgaattcaatcccatcttgtttgtgctctatatcaccactaaac 54654428  T
Q  130 ac---------------aaagaacgccaactgaaaaacacaaatgcagtcaccacgacacatacttaatcaaaatgggattggaaacaaacataattagc 214  Q
    ||               |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||    
T  54654427 acttgaccactaaacacaaagaacgccaactgaaaaacacaaatgcagtcaccgcgacacatacttaatcaaaatgggatttgaaacaaatataattagc 54654328  T
Q  215 aaataaact 223  Q
    |||||||||    
T  54654327 aaataaact 54654319  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 6781261 - 6781336
Alignment:
Q  47 aacatcatcatttacttgatcggcatctgtcc--tcctggttgaattcaatcccatcttgtttgtgctctatatca 120  Q
    |||| |||||||||||||||| ||||||||||  ||||||||||||||||| ||||||||||||||||| ||||||    
T  6781261 aacagcatcatttacttgatcagcatctgtcccctcctggttgaattcaattccatcttgtttgtgctcgatatca 6781336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 6666997 - 6666936
Alignment:
Q  37 tcaatcaaggaa-catcatcatttacttgatcggcatctgt--cctcctggttgaattcaat 95  Q
    |||||||||||| |||||||||| |||||||||||||||||  |||||||||||||| ||||    
T  6666997 tcaatcaaggaaacatcatcattaacttgatcggcatctgtcccctcctggttgaatccaat 6666936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 24761583 - 24761546
Alignment:
Q  186 aaatgggattggaaacaaacataattagcaaataaact 223  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24761583 aaatgggattggaaacaaacataattagcaaataaact 24761546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 24761214 - 24761177
Alignment:
Q  186 aaatgggattggaaacaaacataattagcaaataaact 223  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  24761214 aaatgggatcggaaacaaacataattagcaaataaact 24761177  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 24761249 - 24761210
Alignment:
Q  120 accactaaacacaaagaacgccaactgaaaaacacaaatg 159  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  24761249 accactaaacacaaagaacaccaactgagaaacacaaatg 24761210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 24761618 - 24761579
Alignment:
Q  120 accactaaacacaaagaacgccaactgaaaaacacaaatg 159  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  24761618 accactaaacacaaagaacaccaactgagaaacacaaatg 24761579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 52129018 - 52128981
Alignment:
Q  186 aaatgggattggaaacaaacataattagcaaataaact 223  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52129018 aaatgggattggaaacaaacataattagcaaataaact 52128981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 52128649 - 52128612
Alignment:
Q  186 aaatgggattggaaacaaacataattagcaaataaact 223  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  52128649 aaatgggatcggaaacaaacataattagcaaataaact 52128612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 52128684 - 52128645
Alignment:
Q  120 accactaaacacaaagaacgccaactgaaaaacacaaatg 159  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  52128684 accactaaacacaaagaacaccaactgagaaacacaaatg 52128645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 52129053 - 52129014
Alignment:
Q  120 accactaaacacaaagaacgccaactgaaaaacacaaatg 159  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  52129053 accactaaacacaaagaacaccaactgagaaacacaaatg 52129014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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