View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0225_low_60 (Length: 215)
Name: NF0225_low_60
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_low_60 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 1182193 - 1182024
Alignment:
| Q |
21 |
gtatatagtttccttttgatgaggacttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaataga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1182193 |
gtatatagtttccttttgatgaggacttctatgtatctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcatatttcaaaataga |
1182094 |
T |
|
| Q |
118 |
tttgtttcaccaattccacaaatactagcatgttgtcatgaaagttgtatgccaagtatcagaattatct |
187 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| ||| | ||||| ||| ||||||| |
|
|
| T |
1182093 |
tttgtttcaccaattccataaatactagcatgttgtcatgaaagtcatatactaagtagcaggattatct |
1182024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 46 - 187
Target Start/End: Complemental strand, 8035366 - 8035221
Alignment:
| Q |
46 |
cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
8035366 |
cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata |
8035267 |
T |
|
| Q |
142 |
ctagcatgttgtcatgaaagttgtatgccaagtatcagaattatct |
187 |
Q |
| |
|
| | ||||||||||||||||| || ||||||||| ||||||||||| |
|
|
| T |
8035266 |
ccaacatgttgtcatgaaagtagtctgccaagtagcagaattatct |
8035221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 187
Target Start/End: Original strand, 38111126 - 38111271
Alignment:
| Q |
46 |
cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata |
141 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| ||||| |
|
|
| T |
38111126 |
cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata |
38111225 |
T |
|
| Q |
142 |
ctagcatgttgtcatgaaagttgtatgccaagtatcagaattatct |
187 |
Q |
| |
|
| | ||||||||||||||||| || ||||||||| ||| ||||||| |
|
|
| T |
38111226 |
ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct |
38111271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 187
Target Start/End: Original strand, 45034130 - 45034275
Alignment:
| Q |
46 |
cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
45034130 |
cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagaattgtttcgccaattccacaaata |
45034229 |
T |
|
| Q |
142 |
ctagcatgttgtcatgaaagttgtatgccaagtatcagaattatct |
187 |
Q |
| |
|
| | |||||| |||||||||| || ||||||||| ||| ||||||| |
|
|
| T |
45034230 |
ccaacatgttatcatgaaagtagtctgccaagtagcaggattatct |
45034275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 187
Target Start/End: Complemental strand, 46045562 - 46045417
Alignment:
| Q |
46 |
cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata |
141 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| ||||| |
|
|
| T |
46045562 |
cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata |
46045463 |
T |
|
| Q |
142 |
ctagcatgttgtcatgaaagttgtatgccaagtatcagaattatct |
187 |
Q |
| |
|
| | ||||||||||||||||| || ||||||||| ||| ||||||| |
|
|
| T |
46045462 |
ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct |
46045417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 187
Target Start/End: Original strand, 19303982 - 19304126
Alignment:
| Q |
47 |
ttctatctctctagtaaacttttgaattaccag---tgaattgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaatac |
142 |
Q |
| |
|
|||||| |||| ||||||||||||||||| || || |||| | |||| |||||||| |||||||||| |||||||||| | ||||||||||||||| |
|
|
| T |
19303982 |
ttctatgtctcaggtaaacttttgaattactagcgttggattgttcggtctttgaaatcctatttcaaaaatagatttgttccgccaattccacaaatat |
19304081 |
T |
|
| Q |
143 |
tagcatgttgtcatgaaagttgtatgccaagtatcagaattatct |
187 |
Q |
| |
|
|| | |||||| |||||| || || |||||| |||||||||| |
|
|
| T |
19304082 |
cagtacgttgtcgtgaaagaagtctgtcaagtagtagaattatct |
19304126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 46 - 187
Target Start/End: Complemental strand, 32386143 - 32385998
Alignment:
| Q |
46 |
cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
32386143 |
cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata |
32386044 |
T |
|
| Q |
142 |
ctagcatgttgtcatgaaagttgtatgccaagtatcagaattatct |
187 |
Q |
| |
|
| | ||||||||||||||||| || ||||||||| ||| ||||||| |
|
|
| T |
32386043 |
ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct |
32385998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 187
Target Start/End: Complemental strand, 14024590 - 14024445
Alignment:
| Q |
46 |
cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata |
141 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| ||||| |
|
|
| T |
14024590 |
cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata |
14024491 |
T |
|
| Q |
142 |
ctagcatgttgtcatgaaagttgtatgccaagtatcagaattatct |
187 |
Q |
| |
|
| | ||||||||||||||||| || ||||||||| ||| ||||||| |
|
|
| T |
14024490 |
ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct |
14024445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 187
Target Start/End: Complemental strand, 41999939 - 41999794
Alignment:
| Q |
46 |
cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
41999939 |
cttctatctctctagtaaacttttgaattaacagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata |
41999840 |
T |
|
| Q |
142 |
ctagcatgttgtcatgaaagttgtatgccaagtatcagaattatct |
187 |
Q |
| |
|
| | ||||||||||||||||| || ||||||||| ||| ||||||| |
|
|
| T |
41999839 |
ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct |
41999794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 46 - 187
Target Start/End: Complemental strand, 45093096 - 45092951
Alignment:
| Q |
46 |
cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
45093096 |
cttctatctctctagtaaacttttgaattacgagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata |
45092997 |
T |
|
| Q |
142 |
ctagcatgttgtcatgaaagttgtatgccaagtatcagaattatct |
187 |
Q |
| |
|
| | ||||||||| ||||| | || ||||||||| ||| ||||||| |
|
|
| T |
45092996 |
ccaacatgttgtcgtgaaattagtctgccaagtagcaggattatct |
45092951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 46 - 187
Target Start/End: Complemental strand, 9215878 - 9215733
Alignment:
| Q |
46 |
cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata |
141 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||| ||||||| ||| |||||||| |||||||||| || ||||||||| ||||||||||||||| |
|
|
| T |
9215878 |
cttctatctctctagtcaacttttgaataaccagtgttggattgcttagtctttgaaatcctatttcaaaaatatatttgtttcgccaattccacaaata |
9215779 |
T |
|
| Q |
142 |
ctagcatgttgtcatgaaagttgtatgccaagtatcagaattatct |
187 |
Q |
| |
|
| |||||| |||||||||||| || | ||||||| ||| ||||||| |
|
|
| T |
9215778 |
ccagcatgatgtcatgaaagtagtctcccaagtagcaggattatct |
9215733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 187
Target Start/End: Original strand, 28945820 - 28945965
Alignment:
| Q |
46 |
cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata |
141 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
28945820 |
cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata |
28945919 |
T |
|
| Q |
142 |
ctagcatgttgtcatgaaagttgtatgccaagtatcagaattatct |
187 |
Q |
| |
|
| | ||||||||||||||||| || ||||||||| ||| ||||||| |
|
|
| T |
28945920 |
ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct |
28945965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 187
Target Start/End: Complemental strand, 1369089 - 1368944
Alignment:
| Q |
46 |
cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata |
141 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| ||||| |
|
|
| T |
1369089 |
cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata |
1368990 |
T |
|
| Q |
142 |
ctagcatgttgtcatgaaagttgtatgccaagtatcagaattatct |
187 |
Q |
| |
|
| | ||||||||||||||||| || ||||||||| ||| ||||||| |
|
|
| T |
1368989 |
ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct |
1368944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 36859260 - 36859372
Alignment:
| Q |
46 |
cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttc-aaaatagatttgtttcaccaattccacaaata |
141 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||| |||||| |||| |||||||| |||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
36859260 |
cttctatttctctagtaaacttttgaattactagtgatggattgctcggtctttgaaatcctatttcaaaaatagatttgtttagccaattccacaaata |
36859359 |
T |
|
| Q |
142 |
ctagcatgttgtc |
154 |
Q |
| |
|
| ||||||||| |
|
|
| T |
36859360 |
tcaacatgttgtc |
36859372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 187
Target Start/End: Original strand, 11996187 - 11996332
Alignment:
| Q |
46 |
cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| |||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
11996187 |
cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttggaatcctatttcaaaaatagatttgtttcgccaattccacaaata |
11996286 |
T |
|
| Q |
142 |
ctagcatgttgtcatgaaagttgtatgccaagtatcagaattatct |
187 |
Q |
| |
|
| | ||||||||||||||||| || ||||||||| ||| ||||||| |
|
|
| T |
11996287 |
ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct |
11996332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 47 - 187
Target Start/End: Original strand, 24126868 - 24127012
Alignment:
| Q |
47 |
ttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaatac |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||||||||| ||||||||| |||||| |
|
|
| T |
24126868 |
ttctatctctctagtaaacttttgaattaccagtgttggattgcctggtctttgaaatcatatttcaaaaatagatttgtttcgccaattccataaatac |
24126967 |
T |
|
| Q |
143 |
tagcatgttgtcatgaaagttgtatgccaagtatcagaattatct |
187 |
Q |
| |
|
| ||||||||||||||||| || ||||||||| ||| ||||||| |
|
|
| T |
24126968 |
caacatgttgtcatgaaagtagtctgccaagtagcaggattatct |
24127012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 187
Target Start/End: Complemental strand, 42865572 - 42865427
Alignment:
| Q |
46 |
cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata |
141 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| ||||| |
|
|
| T |
42865572 |
cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata |
42865473 |
T |
|
| Q |
142 |
ctagcatgttgtcatgaaagttgtatgccaagtatcagaattatct |
187 |
Q |
| |
|
| | ||||||||||||||||| || ||||||||| ||| ||||||| |
|
|
| T |
42865472 |
ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct |
42865427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 46 - 187
Target Start/End: Complemental strand, 6293671 - 6293526
Alignment:
| Q |
46 |
cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata |
141 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||| |||||||||||| |||||| || ||||| |
|
|
| T |
6293671 |
cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattacataaata |
6293572 |
T |
|
| Q |
142 |
ctagcatgttgtcatgaaagttgtatgccaagtatcagaattatct |
187 |
Q |
| |
|
| | ||||||||||||||||| || ||||||||| ||| ||||||| |
|
|
| T |
6293571 |
ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct |
6293526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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