View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0225_low_63 (Length: 208)

Name: NF0225_low_63
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0225_low_63
NF0225_low_63
[»] chr5 (1 HSPs)
chr5 (13-188)||(3004272-3004464)
[»] chr4 (1 HSPs)
chr4 (13-188)||(54654319-54654511)
[»] chr6 (2 HSPs)
chr6 (17-85)||(6781266-6781336)
chr6 (13-60)||(6666936-6666985)
[»] chr7 (4 HSPs)
chr7 (151-188)||(24761546-24761583)
chr7 (151-188)||(24761177-24761214)
chr7 (85-124)||(24761210-24761249)
chr7 (85-124)||(24761579-24761618)
[»] chr3 (4 HSPs)
chr3 (151-188)||(52128981-52129018)
chr3 (151-188)||(52128612-52128649)
chr3 (85-124)||(52128645-52128684)
chr3 (85-124)||(52129014-52129053)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 3004464 - 3004272
Alignment:
Q  13 acatcatcatttacttgatcggcatctgtcc--tcctggttgaattcaatcccatcttgtttgtgctctatatcaccactaaacac-------------- 96  Q
    |||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||                  
T  3004464 acatcatcatttacttgatcagcatctgtcccgtcctggttgaattcaatcccatcttgtttgtgctctatatcaccactaaacacttgaccactaaaca 3004365  T
Q  97 -aaagaacgccaactgaaaaacacaaatgcagtcaccacgacacatacttaatcaaaatgggattggaaacaaacataattagcaaataaact 188  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3004364 caaagaacgccaactgaaaaacacaaatgcagtcaccacgacacatacttaatcaaaatgggattggaaacaaacataattagcaaataaact 3004272  T

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Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 54654511 - 54654319
Alignment:
Q  13 acatcatcatttacttgatcggcatctgtcc--tcctggttgaattcaatcccatcttgtttgtgctctatatcaccactaaacac-------------- 96  Q
    |||||||||||  ||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||                  
T  54654511 acatcatcattgtcttgatcagcatctgtcccctcctggttgaattcaatcccatcttgtttgtgctctatatcaccactaaacacttgaccactaaaca 54654412  T
Q  97 -aaagaacgccaactgaaaaacacaaatgcagtcaccacgacacatacttaatcaaaatgggattggaaacaaacataattagcaaataaact 188  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  54654411 caaagaacgccaactgaaaaacacaaatgcagtcaccgcgacacatacttaatcaaaatgggatttgaaacaaatataattagcaaataaact 54654319  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 6781266 - 6781336
Alignment:
Q  17 catcatttacttgatcggcatctgtcc--tcctggttgaattcaatcccatcttgtttgtgctctatatca 85  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||| ||||||||||||||||| ||||||    
T  6781266 catcatttacttgatcagcatctgtcccctcctggttgaattcaattccatcttgtttgtgctcgatatca 6781336  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 6666985 - 6666936
Alignment:
Q  13 acatcatcatttacttgatcggcatctgt--cctcctggttgaattcaat 60  Q
    ||||||||||| |||||||||||||||||  |||||||||||||| ||||    
T  6666985 acatcatcattaacttgatcggcatctgtcccctcctggttgaatccaat 6666936  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 24761583 - 24761546
Alignment:
Q  151 aaatgggattggaaacaaacataattagcaaataaact 188  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24761583 aaatgggattggaaacaaacataattagcaaataaact 24761546  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 24761214 - 24761177
Alignment:
Q  151 aaatgggattggaaacaaacataattagcaaataaact 188  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  24761214 aaatgggatcggaaacaaacataattagcaaataaact 24761177  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 24761249 - 24761210
Alignment:
Q  85 accactaaacacaaagaacgccaactgaaaaacacaaatg 124  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  24761249 accactaaacacaaagaacaccaactgagaaacacaaatg 24761210  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 24761618 - 24761579
Alignment:
Q  85 accactaaacacaaagaacgccaactgaaaaacacaaatg 124  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  24761618 accactaaacacaaagaacaccaactgagaaacacaaatg 24761579  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 52129018 - 52128981
Alignment:
Q  151 aaatgggattggaaacaaacataattagcaaataaact 188  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52129018 aaatgggattggaaacaaacataattagcaaataaact 52128981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 52128649 - 52128612
Alignment:
Q  151 aaatgggattggaaacaaacataattagcaaataaact 188  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  52128649 aaatgggatcggaaacaaacataattagcaaataaact 52128612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 52128684 - 52128645
Alignment:
Q  85 accactaaacacaaagaacgccaactgaaaaacacaaatg 124  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  52128684 accactaaacacaaagaacaccaactgagaaacacaaatg 52128645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 52129053 - 52129014
Alignment:
Q  85 accactaaacacaaagaacgccaactgaaaaacacaaatg 124  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  52129053 accactaaacacaaagaacaccaactgagaaacacaaatg 52129014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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