View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0225_low_64 (Length: 207)

Name: NF0225_low_64
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0225_low_64
NF0225_low_64
[»] chr5 (1 HSPs)
chr5 (19-194)||(3004272-3004464)
[»] chr4 (1 HSPs)
chr4 (19-194)||(54654319-54654511)
[»] chr6 (2 HSPs)
chr6 (122-190)||(6781266-6781336)
chr6 (147-194)||(6666936-6666985)
[»] chr7 (4 HSPs)
chr7 (19-56)||(24761546-24761583)
chr7 (19-56)||(24761177-24761214)
chr7 (83-122)||(24761210-24761249)
chr7 (83-122)||(24761579-24761618)
[»] chr3 (4 HSPs)
chr3 (19-56)||(52128981-52129018)
chr3 (19-56)||(52128612-52128649)
chr3 (83-122)||(52128645-52128684)
chr3 (83-122)||(52129014-52129053)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 3004272 - 3004464
Alignment:
Q  19 agtttatttgctaattatgtttgtttccaatcccattttgattaagtatgtgtcgtggtgactgcatttgtgtttttcagttggcgttcttt-------- 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  3004272 agtttatttgctaattatgtttgtttccaatcccattttgattaagtatgtgtcgtggtgactgcatttgtgtttttcagttggcgttctttgtgtttag 3004371  T
Q  111 -------gtgtttagtggtgatatagagcacaaacaagatgggattgaattcaaccagga--ggacagatgccgatcaagtaaatgatgatgt 194  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||    
T  3004372 tggtcaagtgtttagtggtgatatagagcacaaacaagatgggattgaattcaaccaggacgggacagatgctgatcaagtaaatgatgatgt 3004464  T

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Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 54654319 - 54654511
Alignment:
Q  19 agtttatttgctaattatgtttgtttccaatcccattttgattaagtatgtgtcgtggtgactgcatttgtgtttttcagttggcgttcttt-------- 110  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||            
T  54654319 agtttatttgctaattatatttgtttcaaatcccattttgattaagtatgtgtcgcggtgactgcatttgtgtttttcagttggcgttctttgtgtttag 54654418  T
Q  111 -------gtgtttagtggtgatatagagcacaaacaagatgggattgaattcaaccagga--ggacagatgccgatcaagtaaatgatgatgt 194  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||  |||||||||||    
T  54654419 tggtcaagtgtttagtggtgatatagagcacaaacaagatgggattgaattcaaccaggaggggacagatgctgatcaagacaatgatgatgt 54654511  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 6781336 - 6781266
Alignment:
Q  122 tgatatagagcacaaacaagatgggattgaattcaaccagga--ggacagatgccgatcaagtaaatgatg 190  Q
    |||||| ||||||||||||||||| |||||||||||||||||  |||||||||| ||||||||||||||||    
T  6781336 tgatatcgagcacaaacaagatggaattgaattcaaccaggaggggacagatgctgatcaagtaaatgatg 6781266  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 6666936 - 6666985
Alignment:
Q  147 attgaattcaaccaggagg--acagatgccgatcaagtaaatgatgatgt 194  Q
    |||| ||||||||||||||  ||||||||||||||||| |||||||||||    
T  6666936 attggattcaaccaggaggggacagatgccgatcaagttaatgatgatgt 6666985  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 24761546 - 24761583
Alignment:
Q  19 agtttatttgctaattatgtttgtttccaatcccattt 56  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24761546 agtttatttgctaattatgtttgtttccaatcccattt 24761583  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 24761177 - 24761214
Alignment:
Q  19 agtttatttgctaattatgtttgtttccaatcccattt 56  Q
    |||||||||||||||||||||||||||| |||||||||    
T  24761177 agtttatttgctaattatgtttgtttccgatcccattt 24761214  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 24761210 - 24761249
Alignment:
Q  83 catttgtgtttttcagttggcgttctttgtgtttagtggt 122  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  24761210 catttgtgtttctcagttggtgttctttgtgtttagtggt 24761249  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 24761579 - 24761618
Alignment:
Q  83 catttgtgtttttcagttggcgttctttgtgtttagtggt 122  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  24761579 catttgtgtttctcagttggtgttctttgtgtttagtggt 24761618  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 52128981 - 52129018
Alignment:
Q  19 agtttatttgctaattatgtttgtttccaatcccattt 56  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52128981 agtttatttgctaattatgtttgtttccaatcccattt 52129018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 52128612 - 52128649
Alignment:
Q  19 agtttatttgctaattatgtttgtttccaatcccattt 56  Q
    |||||||||||||||||||||||||||| |||||||||    
T  52128612 agtttatttgctaattatgtttgtttccgatcccattt 52128649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 52128645 - 52128684
Alignment:
Q  83 catttgtgtttttcagttggcgttctttgtgtttagtggt 122  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  52128645 catttgtgtttctcagttggtgttctttgtgtttagtggt 52128684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 52129014 - 52129053
Alignment:
Q  83 catttgtgtttttcagttggcgttctttgtgtttagtggt 122  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  52129014 catttgtgtttctcagttggtgttctttgtgtttagtggt 52129053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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