View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0225_low_67 (Length: 202)

Name: NF0225_low_67
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0225_low_67
NF0225_low_67
[»] chr2 (10 HSPs)
chr2 (35-186)||(6915171-6915322)
chr2 (119-175)||(10492777-10492833)
chr2 (124-176)||(28105350-28105402)
chr2 (119-182)||(10463585-10463648)
chr2 (135-182)||(10507349-10507396)
chr2 (119-170)||(10860707-10860758)
chr2 (119-181)||(10474161-10474223)
chr2 (119-175)||(7476566-7476622)
chr2 (119-170)||(10848803-10848854)
chr2 (119-176)||(7478731-7478788)
[»] chr7 (2 HSPs)
chr7 (115-186)||(15045570-15045641)
chr7 (35-88)||(15047553-15047606)
[»] chr8 (1 HSPs)
chr8 (120-171)||(44307022-44307073)


Alignment Details
Target: chr2 (Bit Score: 144; Significance: 6e-76; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 35 - 186
Target Start/End: Original strand, 6915171 - 6915322
Alignment:
Q  35 agaacctgtgtcagaggtagatgatgtacttgctgaagcgtttcttagcgatgatgagaacatttcagctgctgaccttgagggagcaattcgtagggct 134  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915171 agaaactgtgtcagaggtagatgatgtacttgctgaagcgtttcttagtgatgatgagaacatttcagctgctgaccttgagggagcaattcgtagggct 6915270  T
Q  135 accatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaaca 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915271 accatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaaca 6915322  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 10492833 - 10492777
Alignment:
Q  119 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgc 175  Q
    ||||||||||||||| ||||||||||  |||||| ||||||| ||||||||||||||    
T  10492833 agcaattcgtagggcaaccatagcacataaatttgtaccggttttcatgggtagtgc 10492777  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 28105350 - 28105402
Alignment:
Q  124 ttcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgct 176  Q
    |||||||||| |||||||||||||| |||||||| ||||||||||||| ||||    
T  28105350 ttcgtagggccaccatagcacggaagtttataccagtattcatgggtaatgct 28105402  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 10463648 - 10463585
Alignment:
Q  119 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaaa 182  Q
    |||||||||||| || || ||||||||||||||||||||  | ||||||||||||||| |||||    
T  10463648 agcaattcgtagagccacgatagcacggaaatttataccatttttcatgggtagtgctttcaaa 10463585  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 10507396 - 10507349
Alignment:
Q  135 accatagcacggaaatttataccggtattcatgggtagtgctgtcaaa 182  Q
    ||||||||||||||||||||||| ||||||||||| |||||| |||||    
T  10507396 accatagcacggaaatttatacccgtattcatgggcagtgctttcaaa 10507349  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 10860758 - 10860707
Alignment:
Q  119 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggt 170  Q
    |||| |||||||||  ||||||||||||||||||||||| ||||||||||||    
T  10860758 agcagttcgtagggtcaccatagcacggaaatttataccagtattcatgggt 10860707  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 10474223 - 10474161
Alignment:
Q  119 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaa 181  Q
    |||| |||||||||| |||||||||||||| ||||||||  |||||||||| |||||| ||||    
T  10474223 agcagttcgtagggccaccatagcacggaagtttataccaatattcatgggcagtgctttcaa 10474161  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 7476566 - 7476622
Alignment:
Q  119 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgc 175  Q
    |||||||| |||||| || ||||||| ||||||| ||||||| ||||||||||||||    
T  7476566 agcaattcatagggcaactatagcacagaaatttgtaccggttttcatgggtagtgc 7476622  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 10848854 - 10848803
Alignment:
Q  119 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggt 170  Q
    |||| |||||||||| ||||||||||  ||||||||||| ||||||||||||    
T  10848854 agcagttcgtagggccaccatagcacacaaatttataccagtattcatgggt 10848803  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 7478731 - 7478788
Alignment:
Q  119 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgct 176  Q
    |||| ||| |||||| |||| |||||| |||||||||||||| |||||||| ||||||    
T  7478731 agcagttcttagggcaaccagagcacgcaaatttataccggtcttcatgggcagtgct 7478788  T

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Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 15045641 - 15045570
Alignment:
Q  115 agggagcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaaca 186  Q
    ||||||| ||||||||||||||| | || ||||||||||||||||||||||||||||||||| |||||||||    
T  15045641 agggagccattcgtagggctaccgtggcgcggaaatttataccggtattcatgggtagtgctttcaaaaaca 15045570  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 15047606 - 15047553
Alignment:
Q  35 agaacctgtgtcagaggtagatgatgtacttgctgaagcgtttcttagcgatga 88  Q
    |||| ||||||||||||| |||||| ||||||| |||||||||||||| |||||    
T  15047606 agaaactgtgtcagaggttgatgatatacttgcggaagcgtttcttagtgatga 15047553  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 44307073 - 44307022
Alignment:
Q  120 gcaattcgtagggctaccatagcacggaaatttataccggtattcatgggta 171  Q
    |||||||||||||| |||||||||||||||||| ||||  | ||||||||||    
T  44307073 gcaattcgtagggcaaccatagcacggaaatttgtaccaattttcatgggta 44307022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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