View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0304-INSERTION-7 (Length: 598)
Name: NF0304-INSERTION-7
Description: NF0304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0304-INSERTION-7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 250 - 598
Target Start/End: Complemental strand, 46223103 - 46222756
Alignment:
| Q |
250 |
aagctcttgagaatactcctccttccaccattctcttactggtcctctcttctcttttttcaaatcaccctttctctttccttcatccattgattcccac |
349 |
Q |
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| T |
46223103 |
aagctcttgagaatactcctccttccaccattctcttactggtcttctcttctcttttttcaaatcaccctttctctttccttcatccattgattcccac |
46223004 |
T |
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| Q |
350 |
cactccaatttcttcttcatcttacttttctctccctttccacttccacccaccaaatcatcattctttgttctttcttccttcacctcttttccaatcc |
449 |
Q |
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| T |
46223003 |
cactccaatttcttcttcatcttacttttctctccctttccacttccacccaccaaatcatcattctttgttctttcttccttcacctcttttccaatcc |
46222904 |
T |
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| Q |
450 |
aatccatcacataatcccttcacacttccactcttcttcaatccaacaccaaccatctccctctcatattcctcaaagttagtattaacactctctgttt |
549 |
Q |
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| T |
46222903 |
aatccatcacataat-ccttcacacttccactcttcttcaatccaccaccaaccatctccctctcatattcctcaaagctagtattaacactctctgttt |
46222805 |
T |
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| Q |
550 |
cagcaccatcactctcaaactctacttttcttctataatcactgatttc |
598 |
Q |
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| T |
46222804 |
cagcaccatcactctcaaactcttcttttcttctataatcactgatttc |
46222756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 46223336 - 46223151
Alignment:
| Q |
17 |
tgaatttctccactattacatgaatcataactattccaactcactctccttaattccccacttaaccatgaatcaccactacctcgttccttcctactac |
116 |
Q |
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| T |
46223336 |
tgaatttctccactattacatgaatcataactattccaactcactctccttaattccccacttaaccatgaatcaccactacctcgttccttcctactac |
46223237 |
T |
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| Q |
117 |
ggtttttataactcattttcttcacatcactaccagcatcatgatcatgaacatgatctctctcccatttccaccagttatcacca |
202 |
Q |
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| T |
46223236 |
ggtttttataactcattttcttcacatcactaccagcatcatgatcatgaacatgatctctgtcccatttccaccaattatcacca |
46223151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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