View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0304_high_4 (Length: 444)
Name: NF0304_high_4
Description: NF0304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0304_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 26403505 - 26403091
Alignment:
| Q |
1 |
cctatggattaaaaattgtgattctctatgcttttttacttgccaacatactgttatattgctcacaactataagtaacataagtatacagtttgagcat |
100 |
Q |
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| T |
26403505 |
cctatggattaaaaattgtgattctctatgctttttaacttgccaacatactgttatgttgctcacaactataagtaacataagtatacagtttgagcat |
26403406 |
T |
|
| Q |
101 |
cttaggatccattttttgtattgcttggtcaccaacactatcacttgtagttgcactaccaccattgatgcggttcttcttaacatgaccaagatttgat |
200 |
Q |
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| T |
26403405 |
cttaggatccattttttgtgttgcttggtcac-aacactatcacttgtagttgcactaccaccattgatgctgttcttcttaacatgaccaagatttgat |
26403307 |
T |
|
| Q |
201 |
ttctctatattcatgttattgttgttgttgatgatgtcctcgtcttgtggtaattcttttactccactgatgcatgcctcttgattaccaaaggccagca |
300 |
Q |
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| T |
26403306 |
ttctctatattcatgttattgttgttgttgatgatgtccttgtcttgtggtaattcttttactccactgatgcatgcctcttgatttacaaaggccagca |
26403207 |
T |
|
| Q |
301 |
ctcttctaagatggttgccatcgtcgaaatgctgaaaaagcactatgtaagaagggtttatcaactatgtttgaatttttatccactggtttctcttcta |
400 |
Q |
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| T |
26403206 |
ctcttctaagatggttgccatcgtcgaaatgctgaaaaagcactatgtaagaagggtctatcaactatgtttgaatttttatccactggtttctcttcta |
26403107 |
T |
|
| Q |
401 |
gttgcaccatgtgtgt |
416 |
Q |
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| T |
26403106 |
gttgcaccatgtgtgt |
26403091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 26395520 - 26395415
Alignment:
| Q |
59 |
ttgctcacaactataagtaacataagtatacagtttgagcatcttaggatccattttttgtattgcttggtcaccaacactatcacttgtagttgcacta |
158 |
Q |
| |
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|||||||||| ||||||| ||| |||||||| |||||||| |||| ||||||| |||||| ||||||| |||||||||| | || ||| || ||||||| |
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| T |
26395520 |
ttgctcacaaatataagttacacaagtataccgtttgagcctctttggatccaaattttgtgttgcttgatcaccaacaccaacatttgcagatgcacta |
26395421 |
T |
|
| Q |
159 |
ccacca |
164 |
Q |
| |
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|||||| |
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| T |
26395420 |
ccacca |
26395415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 26402577 - 26402493
Alignment:
| Q |
141 |
tcacttgtagttgcactaccaccattgatgcggttcttcttaacatgaccaagatttgatttctctatattcatgttattgttgt |
225 |
Q |
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|||| ||||||||| ||||||||||| ||| ||||||||| || || ||||||||||||||| |||||||| | ||||||||||| |
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| T |
26402577 |
tcacctgtagttgctctaccaccattcatgtggttcttctcaatataaccaagatttgatttttctatatttaagttattgttgt |
26402493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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