View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0304_low_11 (Length: 297)
Name: NF0304_low_11
Description: NF0304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0304_low_11 |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 6139158 - 6138875
Alignment:
| Q |
8 |
ccaagaatattagttggaacactaaatcgatttacacggcctcctggcaataaccttgcatgttgttgaacatttatcatgttttcagcatatgcttcat |
107 |
Q |
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| T |
6139158 |
ccaagattaatagttggaacactaaatcgatttacacggcctcctggcaataaccttgcatgttgttgaacatttatcatattttcagcatatgcttcat |
6139059 |
T |
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| Q |
108 |
ccattcgttgttcatgaataagatcaaagatgtccacgttattgttgttattctgcctccggcttgtgcttcgagaagaagaacctcttgctgcacctgt |
207 |
Q |
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| T |
6139058 |
ccattcgttgttcatgaataagatcaaagatgtccacgttattgttgttgttctgcctccggcttgtgcttcgagaagaagaacctcttgctccacctgt |
6138959 |
T |
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| Q |
208 |
tgctgtagagggatatagaaatgatgcataggcggatctagaagcaggagaaggatcgtgtcttcctatattgaagtttgtcct |
291 |
Q |
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| T |
6138958 |
tgttgtagagggatatagaaatgatgcataggcggatctagaagcaggagaaggatcgtgtcttcctatgttgaagtttgtcct |
6138875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 33731270 - 33731335
Alignment:
| Q |
170 |
cttgtgcttcgagaagaagaacctcttgctgcacctgttgctgtagagggatatagaaatgatgca |
235 |
Q |
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| T |
33731270 |
cttgtgccttgagaagaagaacttgttgcttctcttgttgctgcagagggatatagaaatgatgca |
33731335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 33802649 - 33802714
Alignment:
| Q |
170 |
cttgtgcttcgagaagaagaacctcttgctgcacctgttgctgtagagggatatagaaatgatgca |
235 |
Q |
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| T |
33802649 |
cttgtgccttgagaagaagaacatgttgcttctcttgttgctgcagagggatatagaaatgatgca |
33802714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 8138 - 8185
Alignment:
| Q |
23 |
ggaacactaaatcgatttacacggcctcctggcaataaccttgcatgt |
70 |
Q |
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| T |
8138 |
ggaacactaaatcgattgacacagcctccttgcaataaccttacatgt |
8185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 18737 - 18784
Alignment:
| Q |
23 |
ggaacactaaatcgatttacacggcctcctggcaataaccttgcatgt |
70 |
Q |
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| T |
18737 |
ggaacactaaatcgattgacacagcctccttgcaataaccttacatgt |
18784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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