View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0304_low_15 (Length: 275)

Name: NF0304_low_15
Description: NF0304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0304_low_15
NF0304_low_15
[»] chr3 (19 HSPs)
chr3 (104-221)||(26403558-26403679)
chr3 (11-105)||(43207447-43207542)
chr3 (14-103)||(53507094-53507183)
chr3 (14-104)||(44708281-44708372)
chr3 (14-103)||(50939445-50939534)
chr3 (11-103)||(48156942-48157036)
chr3 (11-104)||(9878894-9878986)
chr3 (14-103)||(34290849-34290940)
chr3 (14-86)||(54407368-54407439)
chr3 (38-104)||(48720530-48720596)
chr3 (37-94)||(47467591-47467648)
chr3 (37-88)||(50258733-50258784)
chr3 (39-89)||(36605861-36605911)
chr3 (39-88)||(27078819-27078868)
chr3 (39-88)||(27084616-27084665)
chr3 (39-88)||(36716276-36716325)
chr3 (39-88)||(38681348-38681397)
chr3 (39-88)||(54619454-54619503)
chr3 (52-88)||(3954866-3954902)
[»] chr6 (13 HSPs)
chr6 (11-105)||(20711925-20712020)
chr6 (11-88)||(27788895-27788972)
chr6 (14-105)||(17353757-17353848)
chr6 (14-105)||(235435-235527)
chr6 (14-88)||(19986982-19987056)
chr6 (14-104)||(28075587-28075678)
chr6 (37-91)||(30832666-30832720)
chr6 (38-88)||(23070889-23070939)
chr6 (39-88)||(11081684-11081733)
chr6 (39-88)||(13727650-13727699)
chr6 (27-88)||(19741212-19741273)
chr6 (52-88)||(21280349-21280385)
chr6 (52-88)||(27314778-27314814)
[»] chr8 (10 HSPs)
chr8 (14-105)||(42600582-42600674)
chr8 (11-88)||(23798468-23798545)
chr8 (14-88)||(23606831-23606905)
chr8 (14-88)||(10917210-10917283)
chr8 (37-88)||(20003875-20003926)
chr8 (13-88)||(45472207-45472281)
chr8 (39-88)||(2952473-2952522)
chr8 (39-88)||(3048774-3048823)
chr8 (39-88)||(5860996-5861045)
chr8 (39-87)||(30883127-30883175)
[»] chr1 (15 HSPs)
chr1 (14-103)||(40502000-40502090)
chr1 (10-104)||(9173228-9173322)
chr1 (14-103)||(13913693-13913782)
chr1 (14-91)||(19955544-19955620)
chr1 (14-103)||(17168769-17168857)
chr1 (14-88)||(27559463-27559538)
chr1 (14-104)||(44895466-44895557)
chr1 (11-88)||(1367084-1367161)
chr1 (14-106)||(51607648-51607742)
chr1 (13-88)||(23181727-23181801)
chr1 (37-88)||(14146221-14146272)
chr1 (55-88)||(5027991-5028024)
chr1 (39-88)||(27906949-27906998)
chr1 (39-88)||(44655555-44655604)
chr1 (52-88)||(41697293-41697329)
[»] chr7 (13 HSPs)
chr7 (11-103)||(47985176-47985268)
chr7 (11-104)||(19691896-19691990)
chr7 (10-104)||(38415081-38415175)
chr7 (14-88)||(24525894-24525968)
chr7 (14-88)||(48984054-48984127)
chr7 (14-103)||(20091491-20091579)
chr7 (14-102)||(25010254-25010342)
chr7 (14-104)||(10329619-10329710)
chr7 (14-88)||(23551281-23551355)
chr7 (38-88)||(28749597-28749647)
chr7 (55-106)||(10027615-10027667)
chr7 (52-88)||(12596443-12596479)
chr7 (39-94)||(18777019-18777075)
[»] chr2 (12 HSPs)
chr2 (11-103)||(26715931-26716023)
chr2 (14-103)||(27506951-27507041)
chr2 (11-88)||(9045848-9045924)
chr2 (14-105)||(24410234-24410325)
chr2 (14-83)||(8327488-8327556)
chr2 (18-103)||(10762779-10762865)
chr2 (39-88)||(4505695-4505744)
chr2 (37-88)||(3952915-3952966)
chr2 (39-88)||(3155019-3155068)
chr2 (57-94)||(5952949-5952986)
chr2 (39-88)||(6964808-6964857)
chr2 (56-107)||(52968-53020)
[»] chr4 (24 HSPs)
chr4 (14-88)||(24969258-24969332)
chr4 (14-100)||(40089328-40089413)
chr4 (11-88)||(16844843-16844921)
chr4 (11-88)||(32128408-32128485)
chr4 (14-100)||(54083454-54083541)
chr4 (11-107)||(2790947-2791044)
chr4 (38-103)||(38352489-38352554)
chr4 (11-86)||(16882601-16882675)
chr4 (14-88)||(37777434-37777509)
chr4 (14-103)||(19498313-19498402)
chr4 (21-85)||(34027407-34027471)
chr4 (29-87)||(35463958-35464016)
chr4 (55-103)||(54779441-54779490)
chr4 (39-91)||(38209842-38209894)
chr4 (37-88)||(1105447-1105498)
chr4 (17-88)||(10431421-10431492)
chr4 (13-88)||(35780532-35780606)
chr4 (52-94)||(9579483-9579525)
chr4 (52-94)||(9585178-9585220)
chr4 (38-88)||(45560704-45560754)
chr4 (39-88)||(55255096-55255145)
chr4 (52-88)||(5128997-5129033)
chr4 (28-88)||(17679233-17679293)
chr4 (28-88)||(47127997-47128057)
[»] chr5 (14 HSPs)
chr5 (17-88)||(16199005-16199076)
chr5 (14-103)||(27923885-27923974)
chr5 (11-104)||(38869567-38869660)
chr5 (14-103)||(7670728-7670816)
chr5 (14-85)||(9364113-9364183)
chr5 (14-103)||(40389743-40389831)
chr5 (11-88)||(16799530-16799606)
chr5 (37-88)||(15480228-15480279)
chr5 (37-88)||(19523109-19523160)
chr5 (39-88)||(34756615-34756664)
chr5 (52-88)||(22987481-22987517)
chr5 (20-88)||(30853282-30853350)
chr5 (52-88)||(31881604-31881640)
chr5 (39-103)||(34855925-34855989)
[»] scaffold0027 (1 HSPs)
scaffold0027 (14-105)||(4147-4238)
[»] scaffold0039 (1 HSPs)
scaffold0039 (29-103)||(106379-106454)
[»] scaffold0070 (1 HSPs)
scaffold0070 (52-88)||(1027-1063)


Alignment Details
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 104 - 221
Target Start/End: Complemental strand, 26403679 - 26403558
Alignment:
Q  104 atcaggtacatagttgataaagctaataacttgaaacccgaacgactagataa----atttattttaatctttgaattaaaagtttattaaatttatgat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||| ||    
T  26403679 atcaggtacatagttgataaagctaataacttgaaacccgaacgactagataattaaatttattttaatctttgaattaaaagtttattaaatttattat 26403580  T
Q  200 actagttttttcaggttttact 221  Q
    ||||||||||||||||||||||    
T  26403579 actagttttttcaggttttact 26403558  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 43207447 - 43207542
Alignment:
Q  11 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctgat 105  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||    
T  43207447 taatactagtgggtattaaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggaccgggcctgat 43207542  T

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Target: chr3; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 53507094 - 53507183
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 103  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  53507094 tactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 53507183  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 44708372 - 44708281
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 104  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||    
T  44708372 tactagtggatattaaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagagccgggcctga 44708281  T

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Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 50939445 - 50939534
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacc-cctcagggtcgggcctg 103  Q
    |||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  50939445 tactggtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacctcctcagggacgggcctg 50939534  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 48157036 - 48156942
Alignment:
Q  11 taatactagtgggtattaaaaac-aaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 103  Q
    ||||||||||||||||||||||  ||| || |||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  48157036 taatactagtgggtattaaaaaataaaatttaggcccatgattgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 48156942  T

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Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 9878894 - 9878986
Alignment:
Q  11 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 104  Q
    |||||||||||||||||||||| ||  ||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||| ||| |||||    
T  9878894 taatactagtgggtattaaaaaaaa--ttgaggcccatgattaagggaggcccagctctgttgagctgtttgcaccccctcagggccggacctga 9878986  T

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Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 34290849 - 34290940
Alignment:
Q  14 tactagtgggtattaaaaacaaac-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 103  Q
    ||||||||| ||||||||| |||  |||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  34290849 tactagtggatattaaaaaaaaaaattgaggcccatgcctgagggaggcccaactctgttgagctgtttgcaccccctcagggtcgggcctg 34290940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 54407368 - 54407439
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacc 86  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  54407368 tactagtaggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccaactctgttgagctgtttgcacc 54407439  T

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Target: chr3; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 48720530 - 48720596
Alignment:
Q  38 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctcagggtcgggcctga 104  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| || ||||||    
T  48720530 ttgaggcccatgactgagggaagctcagctctgttgagctgtttgcacccgtcagggccgtgcctga 48720596  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 47467648 - 47467591
Alignment:
Q  37 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctcaggg 94  Q
    ||||||||||||   |||||||||| ||||||  ||||||||||||||||||||||||    
T  47467648 cttgaggcccatccttgagggaggctcagctcgtttgagctgtttgcacccctcaggg 47467591  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 50258733 - 50258784
Alignment:
Q  37 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  50258733 cttgaggcccatccttgagggaggcccagctcatttgagctgtttgcacccc 50258784  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 36605911 - 36605861
Alignment:
Q  39 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccct 89  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||||||    
T  36605911 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccct 36605861  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 27078819 - 27078868
Alignment:
Q  39 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  27078819 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 27078868  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 27084616 - 27084665
Alignment:
Q  39 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  27084616 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 27084665  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 36716276 - 36716325
Alignment:
Q  39 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  36716276 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 36716325  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 38681348 - 38681397
Alignment:
Q  39 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  38681348 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 38681397  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 54619454 - 54619503
Alignment:
Q  39 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  54619454 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 54619503  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 3954866 - 3954902
Alignment:
Q  52 tgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||||||||||||||  ||||||||||||||||||    
T  3954866 tgagggaggcccagctcgtttgagctgtttgcacccc 3954902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 20711925 - 20712020
Alignment:
Q  11 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacc-cctcagggtcgggcctgat 105  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  20711925 taatactagtgggtattaaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcacctcctcagggccgggcctgat 20712020  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 27788895 - 27788972
Alignment:
Q  11 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27788895 taatactagtgggtattaaaaaaaaatttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 27788972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 17353848 - 17353757
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctgat 105  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  17353848 tactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctgat 17353757  T

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Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 235435 - 235527
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctgat 105  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||    
T  235435 tactagtgggtattaaaaaaaaaattaaggtccatgactgagggaggcccagctctgttaagctgtttgcaccccctcagggacgggcctgat 235527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 19987056 - 19986982
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||||||||||| ||| ||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  19987056 tactagtgggtattaaaaaaaaatttgaggcccataattgagggaggcccagctctgttgagctgtttgcacccc 19986982  T

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Target: chr6; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 28075678 - 28075587
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 104  Q
    ||||||||||||||||||| ||| |||| |||||||||||| ||| ||| ||||||||||||||||||||| |||||||| | |||||||||    
T  28075678 tactagtgggtattaaaaaaaaaattgaagcccatgactgaaggaagcctagctctgttgagctgtttgcaccccctcagagccgggcctga 28075587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 30832666 - 30832720
Alignment:
Q  37 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctca 91  Q
    ||||||||||||   |||||||||||||||||  |||||||||||||||||||||    
T  30832666 cttgaggcccatccttgagggaggcccagctcatttgagctgtttgcacccctca 30832720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 23070889 - 23070939
Alignment:
Q  38 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  23070889 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 23070939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 11081684 - 11081733
Alignment:
Q  39 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||| || ||||||||| |||||  ||||||||||||||||||    
T  11081684 tgaggcccatgccttagggaggcctagctccattgagctgtttgcacccc 11081733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 13727650 - 13727699
Alignment:
Q  39 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  13727650 tgaggcccatctttgagggaggcccagctcgtttgagctgtttgcacccc 13727699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 19741212 - 19741273
Alignment:
Q  27 taaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||| ||| |||||| ||||   |||||||||||||||||  ||||||||||||||||||    
T  19741212 taaaaaaaaaattgaggtccatccttgagggaggcccagctcgtttgagctgtttgcacccc 19741273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 21280385 - 21280349
Alignment:
Q  52 tgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||||||||||||||  ||||||||||||||||||    
T  21280385 tgagggaggcccagctcgtttgagctgtttgcacccc 21280349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 27314778 - 27314814
Alignment:
Q  52 tgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||||||||||||||  ||||||||||||||||||    
T  27314778 tgagggaggcccagctcgtttgagctgtttgcacccc 27314814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 42600674 - 42600582
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctgat 105  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  42600674 tactagtgggtattaaaaataaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctgat 42600582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 23798468 - 23798545
Alignment:
Q  11 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  23798468 taatactagtgggtattaaaaaaaaatttgaggcccatgactgagggaggcccagctttgttgagctgttcgcacccc 23798545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 23606831 - 23606905
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23606831 tactagtgggtattaaaagaaaatttgaggcccatgactgagggaggcccaactctgttgagctgtttgcacccc 23606905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 10917283 - 10917210
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  10917283 tactagtgggtattaaaaaaaaa-ttgtggcccatgagtgagggaggcccagctctgttgagctgtttgcacccc 10917210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 20003875 - 20003926
Alignment:
Q  37 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  20003875 cttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 20003926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 45472281 - 45472207
Alignment:
Q  13 atactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||| ||||||| ||||| ||| |||||||||||   || ||| |||||||||| |||||||||||||||||||    
T  45472281 atactaatgggtataaaaaaaaaa-ttgaggcccatccttgggggtggcccagctcggttgagctgtttgcacccc 45472207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 2952473 - 2952522
Alignment:
Q  39 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  2952473 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 2952522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 3048774 - 3048823
Alignment:
Q  39 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  3048774 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 3048823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 5860996 - 5861045
Alignment:
Q  39 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  5860996 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 5861045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 30883175 - 30883127
Alignment:
Q  39 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccc 87  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||||    
T  30883175 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccc 30883127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 40502000 - 40502090
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 103  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  40502000 tactagtgggtattaaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctg 40502090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 9173228 - 9173322
Alignment:
Q  10 ataatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 104  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||    
T  9173228 ataatactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccaactctgttgagctgtttgcaccccctcagggccgggcctga 9173322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 13913693 - 13913782
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 103  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  13913693 tactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctg 13913782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 19955620 - 19955544
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctca 91  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19955620 tactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggtccagctctgttgagctgtttgcacccctca 19955544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 17168857 - 17168769
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 103  Q
    ||||||||||||||||||| ||  ||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||    
T  17168857 tactagtgggtattaaaaaaaa--ttgaggcccatgactgagggaggccaagctctattgagctgtttgcatcccctcagggtcgggcctg 17168769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 27559538 - 27559463
Alignment:
Q  14 tactagtgggtattaaaaacaaac-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||||||||||| |||  ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27559538 tactagtgggtattaaaaaaaaaaattgaggcccatgactgagggaggtccagctctgttgagctgtttgcacccc 27559463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 44895557 - 44895466
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 104  Q
    ||||||||| ||||||||| |||  || ||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||    
T  44895557 tactagtggatattaaaaaaaaaaatgtggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgagcctga 44895466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 1367084 - 1367161
Alignment:
Q  11 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1367084 taatactagtgggtattaaaattttttttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 1367161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 51607648 - 51607742
Alignment:
Q  14 tactagtgggtattaaaaacaaact-tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacc-cctcagggtcgggcctgatc 106  Q
    ||||||||| ||||||||| |||   |||||||||||| ||||| |||||||||||| |||||||||||||||| ||||| |  |||||||||||    
T  51607648 tactagtggatattaaaaaaaaaaaatgaggcccatgattgaggaaggcccagctctattgagctgtttgcaccacctcatgaccgggcctgatc 51607742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 23181801 - 23181727
Alignment:
Q  13 atactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||| ||||||| ||||| ||| ||||||||||| | || ||| |||||||||| |||||||||||||||||||    
T  23181801 atactaatgggtataaaaaa-aaatttgaggcccatcattgggggtggcccagctcggttgagctgtttgcacccc 23181727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 14146272 - 14146221
Alignment:
Q  37 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  14146272 cttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 14146221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 5027991 - 5028024
Alignment:
Q  55 gggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||||||||||| |||||||||||||||||||    
T  5027991 gggaggcccagctcggttgagctgtttgcacccc 5028024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 27906949 - 27906998
Alignment:
Q  39 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  27906949 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 27906998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 44655604 - 44655555
Alignment:
Q  39 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  44655604 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 44655555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 41697293 - 41697329
Alignment:
Q  52 tgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||||||||||||||  ||||||||||||||||||    
T  41697293 tgagggaggcccagctcgtttgagctgtttgcacccc 41697329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 47985176 - 47985268
Alignment:
Q  11 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 103  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  47985176 taatactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 47985268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 19691990 - 19691896
Alignment:
Q  11 taatactagtgggtattaaaaacaaacttgaggcccat-gactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 104  Q
    |||||||||| ||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19691990 taatactagttggtattaaaaaaaaa-ttgaggcccattgactgagggaggcccagctctgttgagctgtttgcaccccctcagggtcgggcctga 19691896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 38415081 - 38415175
Alignment:
Q  10 ataatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 104  Q
    ||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| | |||||||||    
T  38415081 ataatactagtgggtattaaaaa-aaatttgaggcccatgactaagggaggcccagctctgttgagctgtttgcatcccctcagagccgggcctga 38415175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 24525894 - 24525968
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24525894 tactagtgggtattaaaaaaaaaattgaggcccatgactaagggaggcccagctctgttgagctgtttgcacccc 24525968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 48984054 - 48984127
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48984054 tactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 48984127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 20091491 - 20091579
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctcagggtcgggcctg 103  Q
    |||| |||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||    
T  20091491 tactggtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctattgagctgtttgcaccccccagggacgggcctg 20091579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 25010342 - 25010254
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcct 102  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||    
T  25010342 tactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccaactctgttgagctgtttgtaccccctcagggccgggcct 25010254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 10329619 - 10329710
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 104  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||| || ||| ||||||| ||||||||| |||||||||  |||||||||    
T  10329619 tactagtgggtattaaaaaaaaaattgaggcccatgactgagggagacctagcgctgttgaactgtttgcaccccctcaggaccgggcctga 10329710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 23551281 - 23551355
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||||||||||| ||| ||||||||||||| ||||||||| ||| |||| ||||||||||||||||||    
T  23551281 tactagtgggtattaaaaaaaaaattgaggcccatgattgagggaggtccaactctattgagctgtttgcacccc 23551355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 28749647 - 28749597
Alignment:
Q  38 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  28749647 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 28749597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 10027667 - 10027615
Alignment:
Q  55 gggaggcccagctctgttgagctgtttgcacc-cctcagggtcgggcctgatc 106  Q
    ||||||||||||||||| |||||||||||||| || ||||| ||| |||||||    
T  10027667 gggaggcccagctctgtagagctgtttgcacctccccagggccggccctgatc 10027615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 12596443 - 12596479
Alignment:
Q  52 tgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||||||||||||||  ||||||||||||||||||    
T  12596443 tgagggaggcccagctcgtttgagctgtttgcacccc 12596479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 18777019 - 18777075
Alignment:
Q  39 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacc-cctcaggg 94  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||| ||||||||    
T  18777019 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacctcctcaggg 18777075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 26716023 - 26715931
Alignment:
Q  11 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 103  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  26716023 taatactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 26715931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 27506951 - 27507041
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 103  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  27506951 tactaatgggtattaaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctg 27507041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 9045924 - 9045848
Alignment:
Q  11 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9045924 taatactaatgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 9045848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 24410325 - 24410234
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctgat 105  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  24410325 tactaatgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccccttagggacgggcctgat 24410234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 8327556 - 8327488
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgc 83  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8327556 tactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgc 8327488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 10762779 - 10762865
Alignment:
Q  18 agtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 103  Q
    ||||||||||||||| ||| ||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||| ||| ||||    
T  10762779 agtgggtattaaaaaaaaaattgaggcccatgattgagggaagcccagctctgttgagctgtttgcatcccctcagggccggccctg 10762865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 4505744 - 4505695
Alignment:
Q  39 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||||||| | |||||||||||||||||  ||||||||||||||||||    
T  4505744 tgaggcccatcattgagggaggcccagctcgtttgagctgtttgcacccc 4505695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 3952966 - 3952915
Alignment:
Q  37 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  3952966 cttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 3952915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 3155068 - 3155019
Alignment:
Q  39 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  3155068 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 3155019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 5952949 - 5952986
Alignment:
Q  57 gaggcccagctctgttgagctgtttgcacccctcaggg 94  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  5952949 gaggcccagctcgtttgagctgtttgcacccctcaggg 5952986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 6964857 - 6964808
Alignment:
Q  39 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  6964857 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 6964808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 52968 - 53020
Alignment:
Q  56 ggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctgatca 107  Q
    ||||||||||||| || |||||| ||||| |||||||||||||| ||||||||    
T  52968 ggaggcccagctcagtagagctgcttgcaccccctcagggtcggccctgatca 53020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 24969332 - 24969258
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24969332 tactagtgggtattaaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 24969258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 40089413 - 40089328
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctcagggtcgggc 100  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  40089413 tactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctcatggccgggc 40089328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 16844921 - 16844843
Alignment:
Q  11 taatactagtgggtatt-aaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16844921 taatactagtgggtatttaaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 16844843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 32128485 - 32128408
Alignment:
Q  11 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||||||||||||||||||| ||| |||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  32128485 taatactagtgggtattaaaaaaaaaattgaggtccataactgagggaggcccagctctgttgagctgtttgcacccc 32128408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 54083454 - 54083541
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggc 100  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||| |||||    
T  54083454 tactagtgggtattaaaaaaaaaattgaggcccatgactgagggatgcccagctctattgagctgtttgcaccccctcagggacgggc 54083541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 2790947 - 2791044
Alignment:
Q  11 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctgatca 107  Q
    |||||||||||||| || |||| ||| |||| | ||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  2790947 taatactagtgggttttcaaaaaaaaattgacgtccatgactgagggagacccagctctgttgagctgtttgcaccccctcagagtcgggcctgatca 2791044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 38352489 - 38352554
Alignment:
Q  38 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctcagggtcgggcctg 103  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38352489 ttgaggcccatgactaagggaggcccagctctgttgagctgtttgcacccctcagggccgggcctg 38352554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 16882601 - 16882675
Alignment:
Q  11 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacc 86  Q
    |||||||||||||||||||||| ||| ||||||| ||||||| ||||| |||||||||||||||||||||||||||    
T  16882601 taatactagtgggtattaaaaaaaaa-ttgaggctcatgactaagggaagcccagctctgttgagctgtttgcacc 16882675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 37777434 - 37777509
Alignment:
Q  14 tactagtgggtattaaaaacaaac-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||||||||||| |||  ||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  37777434 tactagtgggtattaaaaaaaaaaattgaggcccatgattgagggaggtccagctctgttgagctgtttgcacccc 37777509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 19498402 - 19498313
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc-tcagggtcgggcctg 103  Q
    ||||||||||||||||||| ||| ||||||||||||| || |||||||||||| |||||||||| |||||||||| |||||| ||||||||    
T  19498402 tactagtgggtattaaaaaaaaa-ttgaggcccatgattgggggaggcccagcactgttgagctatttgcaccccgtcagggccgggcctg 19498313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 34027471 - 34027407
Alignment:
Q  21 gggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcac 85  Q
    |||||||||||| ||| |||||||||||||||||||||| |||||||||||||||| ||||||||    
T  34027471 gggtattaaaaaaaaaattgaggcccatgactgagggagacccagctctgttgagcagtttgcac 34027407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 35464016 - 35463958
Alignment:
Q  29 aaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccc 87  Q
    |||| ||| |||| ||||||| ||| |||||||||||||||||||||||||||||||||    
T  35464016 aaaaaaaaattgatgcccatggctgggggaggcccagctctgttgagctgtttgcaccc 35463958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 54779490 - 54779441
Alignment:
Q  55 gggaggcccagctctgttgagctgtttgcac-ccctcagggtcgggcctg 103  Q
    |||||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  54779490 gggaggcccagctcggttgagctgtttgcactccctcagggccgggcctg 54779441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 38209842 - 38209894
Alignment:
Q  39 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctca 91  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||||||||    
T  38209842 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccctca 38209894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 1105498 - 1105447
Alignment:
Q  37 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  1105498 cttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 1105447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 10431421 - 10431492
Alignment:
Q  17 tagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||||||| ||||| |   |||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  10431421 tagtgggtataaaaaatatttttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 10431492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 35780532 - 35780606
Alignment:
Q  13 atactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||| ||| ||||||||| ||| |||||||| ||   || |||||||||||||| |||||||||||||||||||    
T  35780532 atactactggatattaaaaaaaaa-ttgaggcctatccgtgggggaggcccagctcggttgagctgtttgcacccc 35780606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 9579483 - 9579525
Alignment:
Q  52 tgagggaggcccagctctgttgagctgtttgcacccctcaggg 94  Q
    |||||||||||||||||  ||||||||||||||| ||||||||    
T  9579483 tgagggaggcccagctcgtttgagctgtttgcacgcctcaggg 9579525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 9585178 - 9585220
Alignment:
Q  52 tgagggaggcccagctctgttgagctgtttgcacccctcaggg 94  Q
    |||||||||||||||||  ||||||||||||||| ||||||||    
T  9585178 tgagggaggcccagctcgtttgagctgtttgcacgcctcaggg 9585220  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 45560704 - 45560754
Alignment:
Q  38 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  45560704 ttgaggcccatctttgagggaggcccagctcgtttgagctgtttgcacccc 45560754  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 55255145 - 55255096
Alignment:
Q  39 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  55255145 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 55255096  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 5128997 - 5129033
Alignment:
Q  52 tgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||||||||||||||  ||||||||||||||||||    
T  5128997 tgagggaggcccagctcgtttgagctgtttgcacccc 5129033  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 17679293 - 17679233
Alignment:
Q  28 aaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||| ||| |||||||||||   |||||||||| ||||||  ||||||||||||||||||    
T  17679293 aaaaataaaattgaggcccatccttgagggaggctcagctcgtttgagctgtttgcacccc 17679233  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 47128057 - 47127997
Alignment:
Q  28 aaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||| ||| |||||||||||   |||||||||||||||||  ||| ||||||||||||||    
T  47128057 aaaaaaaaaattgaggcccatccttgagggaggcccagctcgtttgggctgtttgcacccc 47127997  T

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Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 16199005 - 16199076
Alignment:
Q  17 tagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16199005 tagtgggtattaaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 16199076  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 27923974 - 27923885
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 103  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||    
T  27923974 tactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggtccagctctgttgagctgtttgcaccccctcagggacgggcctg 27923885  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 38869567 - 38869660
Alignment:
Q  11 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 104  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||| || |||||||||    
T  38869567 taatactagtgggtattaaaaa-aaatttgaggcccatgactgagggaggcccagctttgttgagctgtttgcaccccctcatggccgggcctga 38869660  T

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Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 7670816 - 7670728
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctcagggtcgggcctg 103  Q
    ||||||||||| ||||||| ||| || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  7670816 tactagtgggtgttaaaaaaaaa-ttaagacccatgactgagggaggcccaactctgttgagctgtttgcacccctcagggccgggcctg 7670728  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 9364183 - 9364113
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcac 85  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9364183 tactagtggatattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcac 9364113  T

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Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 40389743 - 40389831
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccc-ctcagggtcgggcctg 103  Q
    ||||||||||||||||||| ||  |||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||    
T  40389743 tactagtgggtattaaaaaaaa--ttgaggtccatgactgagggaggcccaggtctgttgagctgtttgcacccgctcagggccgggcctg 40389831  T

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Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 16799530 - 16799606
Alignment:
Q  11 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||||| ||||| ||||||| ||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  16799530 taatactaatgggtgttaaaaaaaaa-ttgaggcccatgactgagggaggcctagctctattgagctgtttgcacccc 16799606  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 15480228 - 15480279
Alignment:
Q  37 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  15480228 cttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 15480279  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 19523160 - 19523109
Alignment:
Q  37 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  19523160 cttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 19523109  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 34756615 - 34756664
Alignment:
Q  39 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  34756615 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 34756664  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 22987481 - 22987517
Alignment:
Q  52 tgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||||||||||||||  ||||||||||||||||||    
T  22987481 tgagggaggcccagctcgtttgagctgtttgcacccc 22987517  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 30853350 - 30853282
Alignment:
Q  20 tgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    ||||||| ||||| ||| |||||| ||||   ||| |||||||||||||  ||||||||||||||||||    
T  30853350 tgggtataaaaaaaaaaattgaggtccatccttgaaggaggcccagctcgtttgagctgtttgcacccc 30853282  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 31881604 - 31881640
Alignment:
Q  52 tgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||||||||||||||  ||||||||||||||||||    
T  31881604 tgagggaggcccagctcgtttgagctgtttgcacccc 31881640  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 34855989 - 34855925
Alignment:
Q  39 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctcagggtcgggcctg 103  Q
    ||||||||||  || |||||||||||||||  || ||||||||||| |||| |||| ||||||||    
T  34855989 tgaggcccataccttagggaggcccagctccatttagctgtttgcatccctaagggccgggcctg 34855925  T

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Target: scaffold0027 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 4238 - 4147
Alignment:
Q  14 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccc-ctcagggtcgggcctgat 105  Q
    ||||||||||||||||||| ||| ||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||| ||| ||||||    
T  4238 tactagtgggtattaaaaaaaaa-ttgaggcccatgactggaggaggcccagctctgttgagctgtttgcaccctctcagggccggccctgat 4147  T

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Target: scaffold0039 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 106454 - 106379
Alignment:
Q  29 aaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccc-ctcagggtcgggcctg 103  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  106454 aaaaaaaatttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccctctcagggccgggcctg 106379  T

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Target: scaffold0070 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 1063 - 1027
Alignment:
Q  52 tgagggaggcccagctctgttgagctgtttgcacccc 88  Q
    |||||||||||||||||  ||||||||||||||||||    
T  1063 tgagggaggcccagctcgtttgagctgtttgcacccc 1027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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